# 2020/02/02 21:23:07 # HUMAN Target (Host) organism # RNA Sequencing source # ERR188058 Replication ID # ERR188058 Sample ID # ERR188058_1 Read1 # ERR188058_2 Read2 R1 27556538 (100.0000%) [A] Total raw reads R1 27023100 (98.0642%) [B] Total reads after QC of (A) R1 R1 27023100 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 51193774 (94.7222%) [B-3] Total mapped reads of (B-2)x2 R1 2852426 (5.2778%) [B-4] Total unmapped reads of (B-2)x2 R1 25643894 (94.8962%) [F] Total mapped reads of (B-2) R1 1379206 (5.1038%) [G] Total unmapped reads of (B-2) R1 120855 (0.4472%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 26902245 (99.5528%) [J] Total mapped reads to host genome ( (B-2)-H) R1 92354 (0.3418%) [I-1] Total mapped reads of (H) to exo. genomes R1 3432.948 [I-3] RPMH of (I-1) R1 3417.595 [I-4] PPM of (I-1) R1 764171.942 [I-5] RPMU of (I-1) R1 145 (0.0005%) [I-6] Total chimeric reads of (I-1) R1 5.390 [I-7] RPMH of (I-6) R1 5.366 [I-8] PPM of (I-6) R1 1199.785 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 27556538 (100.0000%) [A] Total raw reads R2 27023100 (98.0642%) [B] Total reads after QC of (A) R2 R2 27023100 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 51193774 (94.7222%) [B-3] Total mapped reads of (B-2)x2 R2 2852426 (5.2778%) [B-4] Total unmapped reads of (B-2)x2 R2 25549880 (94.5483%) [F] Total mapped reads of (B-2) R2 1473220 (5.4517%) [G] Total unmapped reads of (B-2) R2 152274 (0.5635%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 26870826 (99.4365%) [J] Total mapped reads to host genome ( (B-2)-H) R2 91824 (0.3398%) [I-1] Total mapped reads of (H) to exo. genomes R2 3417.238 [I-3] RPMH of (I-1) R2 3397.982 [I-4] PPM of (I-1) R2 603018.243 [I-5] RPMU of (I-1) R2 165 (0.0006%) [I-6] Total chimeric reads of (I-1) R2 6.140 [I-7] RPMH of (I-6) R2 6.106 [I-8] PPM of (I-6) R2 1083.573 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 177.1303 176.3381 39429.0927 5571 1506 4065 4765.203 415385 ALL_R1 bacteria Nocardia 0.0 3.3474 3.3324 745.1326 119 43 76 90.053 8764 ALL_R1 bacteria Escherichia 2.10e-18 << 16.6065 16.5322 3696.5868 471 34 437 446.751 34550 ALL_R1 fungi Saccharomyces 0.0 << 2801.9595 2789.4283 623714.3685 75379 0 75379 75379.000 5582875 ALL_R1 viral Lymphocryptovirus 0.0 << 174.3013 173.3191 30757.8378 5554 1478 4076 4683.619 411138 ALL_R2 bacteria Nocardia 0.0 157.5546 156.6668 27802.6584 10222 10069 153 4233.622 737964 ALL_R2 bacteria Pseudomonas 1.49e-112 3.1783 3.1604 560.8508 111 36 75 85.403 7951 ALL_R2 bacteria Escherichia 6.09e-18 << 16.5273 16.4342 2916.4729 466 31 435 444.103 34294 ALL_R2 fungi Saccharomyces 0.0 << 2795.2775 2779.5262 493264.8647 75112 1 75111 75111.414 5562012 ALL_R2 viral Lymphocryptovirus 0.0 156.4952 155.6133 27615.7059 10187 10060 127 4205.154 735653 ALL_R2 viral Phix174microvirus n/a << 0.1243 0.1237 27.6612 16 15 1 3.343 971 R1U bacteria Mesorhizobium n/a 0.0372 0.0370 8.2744 1 0 1 1.000 74 R1U bacteria Serratia n/a 0.0372 0.0370 8.2744 1 0 1 1.000 49 R1U bacteria Chlorobaculum n/a << 0.0372 0.0370 8.2744 1 0 1 1.000 45 R1U fungi Postia n/a << 4.4234 4.4036 984.6510 119 0 119 119.000 8657 R1U viral Lymphocryptovirus n/a << 0.2412 0.2399 42.5680 10 6 4 6.482 748 R2U bacteria Nocardia n/a 0.0744 0.0740 13.1342 2 0 2 2.000 80 R2U bacteria Lachnoclostridium n/a 0.0372 0.0370 6.5671 1 0 1 1.000 75 R2U bacteria Lactobacillus n/a 0.0372 0.0370 6.5671 1 0 1 1.000 70 R2U bacteria Flammeovirga n/a 0.0372 0.0370 6.5671 1 0 1 1.000 47 R2U bacteria Bacillus n/a << 0.0744 0.0740 13.1342 2 0 2 2.000 107 R2U fungi Nematocida n/a 0.0383 0.0381 6.7576 2 1 1 1.029 95 R2U fungi Penicillium n/a 0.0383 0.0381 6.7576 2 1 1 1.029 92 R2U fungi Rasamsonia n/a 0.0383 0.0381 6.7576 2 1 1 1.029 86 R2U fungi Trichoderma n/a 0.0383 0.0381 6.7576 2 1 1 1.029 101 R2U fungi Neofusicoccum n/a 0.0372 0.0370 6.5671 1 0 1 1.000 73 R2U fungi Coccidioides n/a 0.0372 0.0370 6.5671 1 0 1 1.000 55 R2U fungi Sclerotinia n/a 0.0372 0.0370 6.5671 1 0 1 1.000 44 R2U fungi Baudoinia n/a 0.0372 0.0370 6.5671 1 0 1 1.000 43 R2U fungi Pseudocercospora n/a 0.0372 0.0370 6.5671 1 0 1 1.000 41 R2U fungi Endocarpon n/a 0.0372 0.0370 6.5671 1 0 1 1.000 38 R2U fungi Mitosporidium n/a 0.0372 0.0370 6.5671 1 0 1 1.000 37 R2U fungi Nannizzia n/a << 4.6147 4.5887 814.3216 124 0 124 124.000 8986 R2U viral Lymphocryptovirus n/a