# 2020/02/02 11:27:34 # HUMAN Target (Host) organism # RNA Sequencing source # ERR188055 Replication ID # ERR188055 Sample ID # ERR188055_1 Read1 # ERR188055_2 Read2 R1 36073736 (100.0000%) [A] Total raw reads R1 35040752 (97.1365%) [B] Total reads after QC of (A) R1 R1 35040752 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 61382645 (87.5875%) [B-3] Total mapped reads of (B-2)x2 R1 8698859 (12.4125%) [B-4] Total unmapped reads of (B-2)x2 R1 30786709 (87.8597%) [F] Total mapped reads of (B-2) R1 4254043 (12.1403%) [G] Total unmapped reads of (B-2) R1 175364 (0.5005%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 34865388 (99.4995%) [J] Total mapped reads to host genome ( (B-2)-H) R1 115328 (0.3291%) [I-1] Total mapped reads of (H) to exo. genomes R1 3307.808 [I-3] RPMH of (I-1) R1 3291.254 [I-4] PPM of (I-1) R1 657649.233 [I-5] RPMU of (I-1) R1 649 (0.0019%) [I-6] Total chimeric reads of (I-1) R1 18.614 [I-7] RPMH of (I-6) R1 18.521 [I-8] PPM of (I-6) R1 3700.874 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 36073736 (100.0000%) [A] Total raw reads R2 35040752 (97.1365%) [B] Total reads after QC of (A) R2 R2 35040752 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 61382645 (87.5875%) [B-3] Total mapped reads of (B-2)x2 R2 8698859 (12.4125%) [B-4] Total unmapped reads of (B-2)x2 R2 30595936 (87.3153%) [F] Total mapped reads of (B-2) R2 4444816 (12.6847%) [G] Total unmapped reads of (B-2) R2 248974 (0.7105%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 34791778 (99.2895%) [J] Total mapped reads to host genome ( (B-2)-H) R2 114833 (0.3277%) [I-1] Total mapped reads of (H) to exo. genomes R2 3300.579 [I-3] RPMH of (I-1) R2 3277.127 [I-4] PPM of (I-1) R2 461224.867 [I-5] RPMU of (I-1) R2 671 (0.0019%) [I-6] Total chimeric reads of (I-1) R2 19.286 [I-7] RPMH of (I-6) R2 19.149 [I-8] PPM of (I-6) R2 2695.060 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 206.4205 205.3875 41039.9626 12796 8315 4481 7196.932 943975 ALL_R1 bacteria Nocardia 0.0 3.6230 3.6049 720.3132 177 59 118 126.317 12904 ALL_R1 bacteria Escherichia 7.85e-56 << 2836.4939 2822.2984 563943.9052 98896 1 98895 98895.459 7237497 ALL_R1 viral Lymphocryptovirus 0.0 << 232.4608 230.8091 32484.2152 12731 8209 4522 8087.725 933722 ALL_R2 bacteria Nocardia 0.0 3.3529 3.3291 468.5429 177 71 106 116.655 12770 ALL_R2 bacteria Escherichia 7.19e-41 << 2826.8460 2806.7605 395025.1834 98351 0 98351 98351.000 7215946 ALL_R2 viral Lymphocryptovirus 0.0 << 0.4665 0.4642 92.7556 24 12 12 16.266 1756 R1U bacteria Nocardia n/a 0.1137 0.1131 22.6044 8 7 1 3.964 580 R1U bacteria Ralstonia n/a 0.0461 0.0459 9.1638 63 62 1 1.607 4229 R1U bacteria Mycobacterium n/a 0.0287 0.0285 5.7024 1 0 1 1.000 42 R1U bacteria Streptomyces n/a << 0.0574 0.0571 11.4048 2 0 2 2.000 108 R1U fungi Schizosaccharomyces n/a 0.0287 0.0285 5.7024 1 0 1 1.000 49 R1U fungi Parastagonospora n/a << 15.8323 15.7531 3147.7384 552 0 552 552.000 40248 R1U viral Lymphocryptovirus n/a << 0.3473 0.3448 48.5312 17 5 12 12.083 748 R2U bacteria Mesorhizobium n/a 0.3221 0.3198 45.0047 14 5 9 11.205 984 R2U bacteria Nocardia n/a 0.1174 0.1165 16.3993 9 5 4 4.083 476 R2U bacteria Mycobacterium n/a 0.0921 0.0915 12.8728 6 5 1 3.205 414 R2U bacteria Spirochaeta n/a 0.0862 0.0856 12.0495 3 0 3 3.000 116 R2U bacteria Streptomyces n/a 0.0287 0.0285 4.0165 3 2 1 1.000 151 R2U bacteria Nitratireductor n/a 0.0287 0.0285 4.0165 1 0 1 1.000 75 R2U bacteria Pelomonas n/a 0.0287 0.0285 4.0165 1 0 1 1.000 75 R2U bacteria Loktanella n/a 0.0287 0.0285 4.0165 1 0 1 1.000 62 R2U bacteria Fusobacterium n/a 0.0287 0.0285 4.0165 1 0 1 1.000 62 R2U bacteria Flexithrix n/a 0.0287 0.0285 4.0165 1 0 1 1.000 57 R2U bacteria Clostridium n/a 0.0287 0.0285 4.0165 1 0 1 1.000 40 R2U bacteria Corynebacterium n/a 0.0287 0.0285 4.0165 1 0 1 1.000 38 R2U bacteria Hyphomicrobium n/a 0.0287 0.0285 4.0165 1 0 1 1.000 36 R2U bacteria Corallococcus n/a 0.0287 0.0285 4.0165 1 0 1 1.000 36 R2U bacteria Bacillus n/a << 0.1276 0.1267 17.8372 5 1 4 4.441 218 R2U fungi Leptosphaeria n/a 0.1101 0.1093 15.3831 6 3 3 3.830 345 R2U fungi Schizosaccharomyces n/a 0.0828 0.0822 11.5755 4 2 2 2.882 225 R2U fungi Aspergillus n/a 0.0794 0.0789 11.1016 6 5 1 2.764 307 R2U fungi Metschnikowia n/a 0.0631 0.0626 8.8162 4 2 2 2.195 260 R2U fungi Botrytis n/a 0.0631 0.0626 8.8162 3 1 2 2.195 139 R2U fungi Pseudozyma n/a 0.0575 0.0571 8.0330 4 2 2 2.000 246 R2U fungi Lodderomyces n/a 0.0575 0.0571 8.0330 3 1 2 2.000 183 R2U fungi Chaetomium n/a 0.0541 0.0537 7.5590 3 2 1 1.882 133 R2U fungi Ustilago n/a 0.0421 0.0418 5.8841 4 3 1 1.465 256 R2U fungi Coprinopsis n/a 0.0414 0.0411 5.7878 4 3 1 1.441 210 R2U fungi Clavispora n/a 0.0414 0.0411 5.7878 4 3 1 1.441 194 R2U fungi Eutypa n/a 0.0345 0.0343 4.8278 4 3 1 1.202 218 R2U fungi Punctularia n/a 0.0343 0.0341 4.7997 2 1 1 1.195 115 R2U fungi Tilletiaria n/a 0.0292 0.0290 4.0848 2 1 1 1.017 90 R2U fungi Paracoccidioides n/a 0.0287 0.0285 4.0165 2 1 1 1.000 76 R2U fungi Coniophora n/a 0.0287 0.0285 4.0165 2 1 1 1.000 116 R2U fungi Cladophialophora n/a 0.0287 0.0285 4.0165 2 1 1 1.000 109 R2U fungi Trichoderma n/a 0.0287 0.0285 4.0165 2 1 1 1.000 108 R2U fungi Fusarium n/a 0.0287 0.0285 4.0165 1 0 1 1.000 55 R2U fungi Gaeumannomyces n/a 0.0287 0.0285 4.0165 1 0 1 1.000 53 R2U fungi Saitoella n/a 0.0287 0.0285 4.0165 1 0 1 1.000 50 R2U fungi Malassezia n/a 0.0287 0.0285 4.0165 1 0 1 1.000 49 R2U fungi Melampsora n/a 0.0287 0.0285 4.0165 1 0 1 1.000 44 R2U fungi Fibroporia n/a 0.0287 0.0285 4.0165 1 0 1 1.000 42 R2U fungi Rhinocladiella n/a 0.0287 0.0285 4.0165 1 0 1 1.000 40 R2U fungi Histoplasma n/a 0.0287 0.0285 4.0165 1 0 1 1.000 40 R2U fungi Coccidioides n/a 0.0287 0.0285 4.0165 1 0 1 1.000 39 R2U fungi Alternaria n/a << 16.0095 15.8958 2237.1814 557 0 557 557.000 40102 R2U viral Lymphocryptovirus n/a