# 2020/03/04 23:54:47
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR793094	Replication ID
# SRP000547	Sample ID
# SRR793094_1.filt	Read1
# SRR793094_2.filt	Read2
R1	       11761994 (100.0000%)	[A] Total raw reads
R1	        9595337 (81.5792%)	[B] Total reads after QC of (A)
R1		
R1	        9595337 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       17709828 (92.2835%)	[B-3] Total mapped reads of (B-2)x2
R1	        1480846 (7.7165%)	[B-4] Total unmapped reads of (B-2)x2
R1	        8898013 (92.7327%)	[F] Total mapped reads of (B-2)
R1	         697324 (7.2673%)	[G] Total unmapped reads of (B-2)
R1	          75066 (0.7823%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        9520271 (99.2177%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2285 (0.0238%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       240.014	[I-3] RPMH of (I-1)
R1	       238.136	[I-4] PPM of (I-1)
R1	     30439.880	[I-5] RPMU of (I-1)
R1	             18 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.891	[I-7] RPMH of (I-6)
R1	         1.876	[I-8] PPM of (I-6)
R1	       239.789	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       11761994 (100.0000%)	[A] Total raw reads
R2	        9595337 (81.5792%)	[B] Total reads after QC of (A)
R2		
R2	        9595337 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       17709828 (92.2835%)	[B-3] Total mapped reads of (B-2)x2
R2	        1480846 (7.7165%)	[B-4] Total unmapped reads of (B-2)x2
R2	        8811815 (91.8343%)	[F] Total mapped reads of (B-2)
R2	         783522 (8.1657%)	[G] Total unmapped reads of (B-2)
R2	         105067 (1.0950%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        9490270 (98.9050%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2280 (0.0238%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       240.246	[I-3] RPMH of (I-1)
R2	       237.615	[I-4] PPM of (I-1)
R2	     21700.439	[I-5] RPMU of (I-1)
R2	             13 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.370	[I-7] RPMH of (I-6)
R2	         1.355	[I-8] PPM of (I-6)
R2	       123.731	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.2201	1.2106	154.7438	21	15	6	11.616	1454	ALL_R1	bacteria	Eubacterium	7.36e-07
<<
233.6068	231.7792	29627.2613	2224	0	2224	2224.000	198956	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2.5804	2.5522	233.0798	42	28	14	24.489	2849	ALL_R2	bacteria	Tetrasphaera	1.15e-15
2.4352	2.4086	219.9644	45	35	10	23.111	2931	ALL_R2	bacteria	Alcanivorax	5.87e-15
1.3955	1.3803	126.0529	22	14	8	13.244	1751	ALL_R2	bacteria	Eubacterium	1.54e-11
<<
231.6056	229.0696	20919.9844	2198	0	2198	2198.000	200991	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.7857	1.7717	226.4674	17	0	17	17.000	1618	R1U	viral	Lymphocryptovirus	n/a	
<<
0.1054	0.1042	9.5177	1	0	1	1.000	36	R2U	bacteria	Helicobacter	n/a	
<<
0.9483	0.9380	85.6596	9	0	9	9.000	841	R2U	viral	Lymphocryptovirus	n/a