# 2020/03/04 18:19:38
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR792326	Replication ID
# SRP000547	Sample ID
# SRR792326_1.filt	Read1
# SRR792326_2.filt	Read2
R1	        9892204 (100.0000%)	[A] Total raw reads
R1	        7649362 (77.3272%)	[B] Total reads after QC of (A)
R1		
R1	        7649362 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       13939939 (91.1183%)	[B-3] Total mapped reads of (B-2)x2
R1	        1358785 (8.8817%)	[B-4] Total unmapped reads of (B-2)x2
R1	        7070263 (92.4294%)	[F] Total mapped reads of (B-2)
R1	         579099 (7.5706%)	[G] Total unmapped reads of (B-2)
R1	          67205 (0.8786%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        7582157 (99.1214%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1717 (0.0224%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       226.453	[I-3] RPMH of (I-1)
R1	       224.463	[I-4] PPM of (I-1)
R1	     25548.694	[I-5] RPMU of (I-1)
R1	              9 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.187	[I-7] RPMH of (I-6)
R1	         1.177	[I-8] PPM of (I-6)
R1	       133.919	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        9892204 (100.0000%)	[A] Total raw reads
R2	        7649362 (77.3272%)	[B] Total reads after QC of (A)
R2		
R2	        7649362 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       13939939 (91.1183%)	[B-3] Total mapped reads of (B-2)x2
R2	        1358785 (8.8817%)	[B-4] Total unmapped reads of (B-2)x2
R2	        6869676 (89.8072%)	[F] Total mapped reads of (B-2)
R2	         779686 (10.1928%)	[G] Total unmapped reads of (B-2)
R2	         147698 (1.9309%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        7501664 (98.0691%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1754 (0.0229%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       233.815	[I-3] RPMH of (I-1)
R2	       229.300	[I-4] PPM of (I-1)
R2	     11875.584	[I-5] RPMU of (I-1)
R2	             18 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         2.400	[I-7] RPMH of (I-6)
R2	         2.353	[I-8] PPM of (I-6)
R2	       121.870	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.5784	1.5646	178.0820	22	16	6	11.968	1357	ALL_R1	bacteria	Alcanivorax	1.03e-09
0.2638	0.2615	29.7597	2	0	2	2.000	185	ALL_R1	bacteria	Sphingomonas	3.80e-04
<<
220.2539	218.3189	24849.3416	1670	0	1670	1670.000	154911	ALL_R1	viral	Lymphocryptovirus	0.0
<<
4.2787	4.1960	217.3151	57	40	17	32.097	3908	ALL_R2	bacteria	Alcanivorax	1.08e-72
2.5606	2.5112	130.0559	41	35	6	19.209	2764	ALL_R2	bacteria	Tetrasphaera	2.74e-05
0.2666	0.2615	13.5411	2	0	2	2.000	159	ALL_R2	bacteria	Sphingomonas	5.02e-04
<<
222.6173	218.3189	11306.8559	1670	0	1670	1670.000	151673	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.1870	1.1766	133.9186	9	0	9	9.000	895	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2339	0.2294	11.8824	3	2	1	1.755	167	R2U	bacteria	Alcanivorax	n/a	
0.1333	0.1307	6.7706	1	0	1	1.000	38	R2U	bacteria	Leptolyngbya	n/a	
0.1333	0.1307	6.7706	1	0	1	1.000	38	R2U	bacteria	Escherichia	n/a	
0.1333	0.1307	6.7706	1	0	1	1.000	36	R2U	bacteria	Dysgonomonas	n/a	
<<
1.5996	1.5688	81.2469	12	0	12	12.000	968	R2U	viral	Lymphocryptovirus	n/a