# 2020/02/26 01:20:43
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR060297	Replication ID
# SRP001294	Sample ID
# SRR060297_1.filt	Read1
# SRR060297_2.filt	Read2
R1	       28270319 (100.0000%)	[A] Total raw reads
R1	       24981072 (88.3650%)	[B] Total reads after QC of (A)
R1		
R1	       24981072 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       45841953 (91.7534%)	[B-3] Total mapped reads of (B-2)x2
R1	        4120191 (8.2466%)	[B-4] Total unmapped reads of (B-2)x2
R1	       22942138 (91.8381%)	[F] Total mapped reads of (B-2)
R1	        2038934 (8.1619%)	[G] Total unmapped reads of (B-2)
R1	         458744 (1.8364%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       24522328 (98.1636%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          61608 (0.2466%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2512.323	[I-3] RPMH of (I-1)
R1	      2466.187	[I-4] PPM of (I-1)
R1	    134297.124	[I-5] RPMU of (I-1)
R1	            690 (0.0028%)	[I-6] Total chimeric reads of (I-1)
R1	        28.138	[I-7] RPMH of (I-6)
R1	        27.621	[I-8] PPM of (I-6)
R1	      1504.107	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       28270319 (100.0000%)	[A] Total raw reads
R2	       24981072 (88.3650%)	[B] Total reads after QC of (A)
R2		
R2	       24981072 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       45841953 (91.7534%)	[B-3] Total mapped reads of (B-2)x2
R2	        4120191 (8.2466%)	[B-4] Total unmapped reads of (B-2)x2
R2	       22899815 (91.6687%)	[F] Total mapped reads of (B-2)
R2	        2081257 (8.3313%)	[G] Total unmapped reads of (B-2)
R2	         460652 (1.8440%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       24520420 (98.1560%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          60921 (0.2439%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2484.501	[I-3] RPMH of (I-1)
R2	      2438.686	[I-4] PPM of (I-1)
R2	    132249.507	[I-5] RPMU of (I-1)
R2	            542 (0.0022%)	[I-6] Total chimeric reads of (I-1)
R2	        22.104	[I-7] RPMH of (I-6)
R2	        21.696	[I-8] PPM of (I-6)
R2	      1176.593	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2505.9611	2459.9425	133957.0654	61452	0	61452	61452.000	4297611	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2477.8124	2432.1214	131893.4901	60757	0	60757	60757.000	4259563	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0408	0.0400	2.1799	1	0	1	1.000	37	R1U	bacteria	Helicobacter	n/a	
<<
27.9337	27.4208	1493.2075	685	0	685	685.000	47381	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0408	0.0400	2.1708	1	0	1	1.000	39	R2U	bacteria	Budvicia	n/a	
<<
21.9817	21.5763	1170.0807	539	0	539	539.000	37832	R2U	viral	Lymphocryptovirus	n/a