# 2020/01/19 07:57:52
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR044236	Replication ID
# SRP001294	Sample ID
# SRR044236_1.filt	Read1
# SRR044236_2.filt	Read2
R1	       31644679 (100.0000%)	[A] Total raw reads
R1	       28320893 (89.4965%)	[B] Total reads after QC of (A)
R1		
R1	       28320893 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       51765291 (91.3906%)	[B-3] Total mapped reads of (B-2)x2
R1	        4876495 (8.6094%)	[B-4] Total unmapped reads of (B-2)x2
R1	       25905931 (91.4729%)	[F] Total mapped reads of (B-2)
R1	        2414962 (8.5271%)	[G] Total unmapped reads of (B-2)
R1	         454417 (1.6045%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       27866476 (98.3955%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          26874 (0.0949%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       964.385	[I-3] RPMH of (I-1)
R1	       948.911	[I-4] PPM of (I-1)
R1	     59139.513	[I-5] RPMU of (I-1)
R1	            197 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R1	         7.069	[I-7] RPMH of (I-6)
R1	         6.956	[I-8] PPM of (I-6)
R1	       433.522	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       31644679 (100.0000%)	[A] Total raw reads
R2	       28320893 (89.4965%)	[B] Total reads after QC of (A)
R2		
R2	       28320893 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       51765291 (91.3906%)	[B-3] Total mapped reads of (B-2)x2
R2	        4876495 (8.6094%)	[B-4] Total unmapped reads of (B-2)x2
R2	       25859360 (91.3084%)	[F] Total mapped reads of (B-2)
R2	        2461533 (8.6916%)	[G] Total unmapped reads of (B-2)
R2	         465376 (1.6432%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       27855517 (98.3568%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          26725 (0.0944%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       959.415	[I-3] RPMH of (I-1)
R2	       943.650	[I-4] PPM of (I-1)
R2	     57426.683	[I-5] RPMU of (I-1)
R2	            159 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R2	         5.708	[I-7] RPMH of (I-6)
R2	         5.614	[I-8] PPM of (I-6)
R2	       341.659	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3.0896	3.0400	189.4647	168	130	38	86.096	11694	ALL_R1	bacteria	Alcanivorax	7.02e-12
<<
956.0951	940.7542	58631.1692	26643	0	26643	26643.000	1886151	ALL_R1	viral	Lymphocryptovirus	0.0
<<
3.6893	3.6286	220.8236	201	156	45	102.766	13791	ALL_R2	bacteria	Alcanivorax	2.65e-17
<<
949.7580	934.1513	56848.6557	26456	0	26456	26456.000	1838845	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.1740	0.1713	10.6730	8	5	3	4.850	488	R1U	bacteria	Alcanivorax	n/a	
<<
6.7465	6.6382	413.7169	188	0	188	188.000	13107	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2180	0.2144	13.0497	13	11	2	6.073	872	R2U	bacteria	Alcanivorax	n/a	
0.0359	0.0353	2.1488	1	0	1	1.000	44	R2U	bacteria	Ornithinibacillus	n/a	
0.0359	0.0353	2.1488	1	0	1	1.000	36	R2U	bacteria	Chitiniphilus	n/a	
<<
5.1695	5.0846	309.4272	144	0	144	144.000	9947	R2U	viral	Lymphocryptovirus	n/a