# 2020/03/07 00:46:43
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR035017	Replication ID
# SRP000547	Sample ID
# SRR035017_1.filt	Read1
# SRR035017_2.filt	Read2
R1	       20097532 (100.0000%)	[A] Total raw reads
R1	       17560904 (87.3784%)	[B] Total reads after QC of (A)
R1		
R1	       17560904 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       32380987 (92.1962%)	[B-3] Total mapped reads of (B-2)x2
R1	        2740821 (7.8038%)	[B-4] Total unmapped reads of (B-2)x2
R1	       16200649 (92.2541%)	[F] Total mapped reads of (B-2)
R1	        1360255 (7.7459%)	[G] Total unmapped reads of (B-2)
R1	         139480 (0.7943%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       17421424 (99.2057%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           5029 (0.0286%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       288.668	[I-3] RPMH of (I-1)
R1	       286.375	[I-4] PPM of (I-1)
R1	     36055.348	[I-5] RPMU of (I-1)
R1	             68 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R1	         3.903	[I-7] RPMH of (I-6)
R1	         3.872	[I-8] PPM of (I-6)
R1	       487.525	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       20097532 (100.0000%)	[A] Total raw reads
R2	       17560904 (87.3784%)	[B] Total reads after QC of (A)
R2		
R2	       17560904 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       32380987 (92.1962%)	[B-3] Total mapped reads of (B-2)x2
R2	        2740821 (7.8038%)	[B-4] Total unmapped reads of (B-2)x2
R2	       16180338 (92.1384%)	[F] Total mapped reads of (B-2)
R2	        1380566 (7.8616%)	[G] Total unmapped reads of (B-2)
R2	         140448 (0.7998%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       17420456 (99.2002%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           5059 (0.0288%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       290.406	[I-3] RPMH of (I-1)
R2	       288.083	[I-4] PPM of (I-1)
R2	     36020.449	[I-5] RPMU of (I-1)
R2	             70 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         4.018	[I-7] RPMH of (I-6)
R2	         3.986	[I-8] PPM of (I-6)
R2	       498.405	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.5242	1.5121	190.3785	51	39	12	26.554	3711	ALL_R1	bacteria	Eubacterium	1.53e-09
1.4814	1.4696	185.0301	49	37	12	25.808	3514	ALL_R1	bacteria	Alcanivorax	3.38e-11
1.2878	1.2776	160.8474	45	36	9	22.435	3160	ALL_R1	bacteria	Campylobacter	2.53e-04
<<
281.6647	279.4275	35180.6711	4907	0	4907	4907.000	354215	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2.5427	2.5224	315.3836	83	62	21	44.295	5827	ALL_R2	bacteria	Alcanivorax	3.06e-37
1.5086	1.4965	187.1155	55	43	12	26.280	3974	ALL_R2	bacteria	Eubacterium	1.95e-09
1.2501	1.2401	155.0538	48	39	9	21.777	3470	ALL_R2	bacteria	Campylobacter	2.80e-04
<<
281.1637	278.9150	34874.1171	4898	0	4898	4898.000	349923	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.7884	3.7583	473.1861	66	0	66	66.000	4593	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0655	0.0650	8.1240	2	1	1	1.141	109	R2U	bacteria	Campylobacter	n/a	
<<
3.7886	3.7583	469.9248	66	0	66	66.000	4910	R2U	viral	Lymphocryptovirus	n/a	
0.0574	0.0569	7.1201	1	0	1	1.000	40	R2U	viral	Orthopoxvirus	n/a