# 2020/03/02 13:05:57
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR251878	Replication ID
# SRP000808	Sample ID
# ERR251878_1.filt	Read1
# ERR251878_2.filt	Read2
R1	       51499226 (100.0000%)	[A] Total raw reads
R1	       51170468 (99.3616%)	[B] Total reads after QC of (A)
R1		
R1	       51170468 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       93270753 (91.1373%)	[B-3] Total mapped reads of (B-2)x2
R1	        9070183 (8.8627%)	[B-4] Total unmapped reads of (B-2)x2
R1	       47108736 (92.0624%)	[F] Total mapped reads of (B-2)
R1	        4061732 (7.9376%)	[G] Total unmapped reads of (B-2)
R1	         540281 (1.0558%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       50630187 (98.9442%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          60538 (0.1183%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1195.690	[I-3] RPMH of (I-1)
R1	      1183.065	[I-4] PPM of (I-1)
R1	    112049.100	[I-5] RPMU of (I-1)
R1	            201 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R1	         3.970	[I-7] RPMH of (I-6)
R1	         3.928	[I-8] PPM of (I-6)
R1	       372.029	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       51499226 (100.0000%)	[A] Total raw reads
R2	       51170468 (99.3616%)	[B] Total reads after QC of (A)
R2		
R2	       51170468 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       93270753 (91.1373%)	[B-3] Total mapped reads of (B-2)x2
R2	        9070183 (8.8627%)	[B-4] Total unmapped reads of (B-2)x2
R2	       46162017 (90.2122%)	[F] Total mapped reads of (B-2)
R2	        5008451 (9.7878%)	[G] Total unmapped reads of (B-2)
R2	         820445 (1.6034%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       50350023 (98.3966%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          59496 (0.1163%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1181.648	[I-3] RPMH of (I-1)
R2	      1162.702	[I-4] PPM of (I-1)
R2	     72516.744	[I-5] RPMU of (I-1)
R2	            193 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         3.833	[I-7] RPMH of (I-6)
R2	         3.772	[I-8] PPM of (I-6)
R2	       235.238	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1194.0702	1181.4627	111897.3275	60456	0	60456	60456.000	5805928	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.9623	1.9309	120.4273	167	108	59	98.804	13404	ALL_R2	bacteria	Alcanivorax	2.62e-13
<<
1177.4771	1158.5980	72260.7853	59286	0	59286	59286.000	5521206	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.9107	3.8694	366.4760	198	0	198	198.000	18783	R1U	viral	Lymphocryptovirus	n/a	
<<
0.1411	0.1389	8.6612	9	3	6	7.106	724	R2U	bacteria	Alcanivorax	n/a	
0.0617	0.0607	3.7858	5	3	2	3.106	415	R2U	bacteria	Tetrasphaera	n/a	
0.0397	0.0391	2.4377	2	0	2	2.000	123	R2U	bacteria	Leifsonia	n/a	
0.0199	0.0195	1.2189	1	0	1	1.000	100	R2U	bacteria	Nevskia	n/a	
0.0199	0.0195	1.2189	1	0	1	1.000	100	R2U	bacteria	Methylobacterium	n/a	
<<
3.5353	3.4786	216.9554	178	0	178	178.000	16770	R2U	viral	Lymphocryptovirus	n/a