# 2020/02/01 03:47:37
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR251032	Replication ID
# SRP001294	Sample ID
# ERR251032_1.filt	Read1
# ERR251032_2.filt	Read2
R1	       67772492 (100.0000%)	[A] Total raw reads
R1	       64426150 (95.0624%)	[B] Total reads after QC of (A)
R1		
R1	       64426150 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	      117376790 (91.0941%)	[B-3] Total mapped reads of (B-2)x2
R1	       11475510 (8.9059%)	[B-4] Total unmapped reads of (B-2)x2
R1	       59164501 (91.8331%)	[F] Total mapped reads of (B-2)
R1	        5261649 (8.1669%)	[G] Total unmapped reads of (B-2)
R1	         707866 (1.0987%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       63718284 (98.9013%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          52504 (0.0815%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       824.002	[I-3] RPMH of (I-1)
R1	       814.949	[I-4] PPM of (I-1)
R1	     74172.230	[I-5] RPMU of (I-1)
R1	           1277 (0.0020%)	[I-6] Total chimeric reads of (I-1)
R1	        20.041	[I-7] RPMH of (I-6)
R1	        19.821	[I-8] PPM of (I-6)
R1	      1804.014	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       67772492 (100.0000%)	[A] Total raw reads
R2	       64426150 (95.0624%)	[B] Total reads after QC of (A)
R2		
R2	       64426150 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	      117376790 (91.0941%)	[B-3] Total mapped reads of (B-2)x2
R2	       11475510 (8.9059%)	[B-4] Total unmapped reads of (B-2)x2
R2	       58212289 (90.3551%)	[F] Total mapped reads of (B-2)
R2	        6213861 (9.6449%)	[G] Total unmapped reads of (B-2)
R2	        1151840 (1.7878%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       63274310 (98.2122%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          50906 (0.0790%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       804.529	[I-3] RPMH of (I-1)
R2	       790.145	[I-4] PPM of (I-1)
R2	     44195.374	[I-5] RPMU of (I-1)
R2	           1227 (0.0019%)	[I-6] Total chimeric reads of (I-1)
R2	        19.392	[I-7] RPMH of (I-6)
R2	        19.045	[I-8] PPM of (I-6)
R2	      1065.252	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
821.3812	812.3565	73936.3100	52337	0	52337	52337.000	4635593	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.7042	1.6738	93.6198	205	154	51	107.835	14589	ALL_R2	bacteria	Alcanivorax	8.08e-14
<<
799.7143	785.4166	43930.9010	50602	1	50601	50601.369	4564386	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0446	0.0441	4.0163	6	5	1	2.843	428	R1U	bacteria	Alcanivorax	n/a	
0.0157	0.0155	1.4127	1	0	1	1.000	93	R1U	bacteria	Ralstonia	n/a	
0.0157	0.0155	1.4127	1	0	1	1.000	100	R1U	bacteria	Nevskia	n/a	
<<
19.8530	19.6349	1787.0614	1265	0	1265	1265.000	112290	R1U	viral	Lymphocryptovirus	n/a	
<<
0.1473	0.1447	8.0931	15	9	6	9.322	1110	R2U	bacteria	Alcanivorax	n/a	
0.0882	0.0867	4.8470	10	7	3	5.583	669	R2U	bacteria	Tetrasphaera	n/a	
0.0316	0.0310	1.7364	2	0	2	2.000	181	R2U	bacteria	Bradyrhizobium	n/a	
0.0275	0.0270	1.5089	3	2	1	1.738	215	R2U	bacteria	Eubacterium	n/a	
<<
18.8228	18.4863	1033.9978	1191	0	1191	1191.000	108714	R2U	viral	Lymphocryptovirus	n/a