# 2020/01/18 00:31:54
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR246121	Replication ID
# SRP000808	Sample ID
# ERR246121_1.filt	Read1
# ERR246121_2.filt	Read2
R1	        1633120 (100.0000%)	[A] Total raw reads
R1	        1604374 (98.2398%)	[B] Total reads after QC of (A)
R1		
R1	        1604374 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2964136 (92.3767%)	[B-3] Total mapped reads of (B-2)x2
R1	         244612 (7.6233%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1490177 (92.8821%)	[F] Total mapped reads of (B-2)
R1	         114197 (7.1179%)	[G] Total unmapped reads of (B-2)
R1	          13003 (0.8105%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1591371 (99.1895%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1621 (0.1010%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1018.618	[I-3] RPMH of (I-1)
R1	      1010.363	[I-4] PPM of (I-1)
R1	    124663.539	[I-5] RPMU of (I-1)
R1	              3 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.885	[I-7] RPMH of (I-6)
R1	         1.870	[I-8] PPM of (I-6)
R1	       230.716	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1633120 (100.0000%)	[A] Total raw reads
R2	        1604374 (98.2398%)	[B] Total reads after QC of (A)
R2		
R2	        1604374 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2964136 (92.3767%)	[B-3] Total mapped reads of (B-2)x2
R2	         244612 (7.6233%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1473959 (91.8713%)	[F] Total mapped reads of (B-2)
R2	         130415 (8.1287%)	[G] Total unmapped reads of (B-2)
R2	          19268 (1.2010%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1585106 (98.7990%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1601 (0.0998%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1010.027	[I-3] RPMH of (I-1)
R2	       997.897	[I-4] PPM of (I-1)
R2	     83091.136	[I-5] RPMU of (I-1)
R2	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.000	[I-7] RPMH of (I-6)
R2	         0.000	[I-8] PPM of (I-6)
R2	         0.000	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1017.3618	1009.1163	124509.7285	1619	0	1619	1619.000	161364	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1010.0271	997.8970	83091.1356	1601	0	1601	1601.000	159630	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.8852	1.8699	230.7160	3	0	3	3.000	300	R1U	viral	Lymphocryptovirus	n/a