# 2020/01/25 15:47:36
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR245045	Replication ID
# SRP001294	Sample ID
# ERR245045_1.filt	Read1
# ERR245045_2.filt	Read2
R1	        1844007 (100.0000%)	[A] Total raw reads
R1	        1804180 (97.8402%)	[B] Total reads after QC of (A)
R1		
R1	        1804180 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3350909 (92.8652%)	[B-3] Total mapped reads of (B-2)x2
R1	         257451 (7.1348%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1684998 (93.3941%)	[F] Total mapped reads of (B-2)
R1	         119182 (6.6059%)	[G] Total unmapped reads of (B-2)
R1	          12765 (0.7075%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1791415 (99.2925%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1010 (0.0560%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       563.800	[I-3] RPMH of (I-1)
R1	       559.811	[I-4] PPM of (I-1)
R1	     79122.601	[I-5] RPMU of (I-1)
R1	              5 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.791	[I-7] RPMH of (I-6)
R1	         2.771	[I-8] PPM of (I-6)
R1	       391.696	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1844007 (100.0000%)	[A] Total raw reads
R2	        1804180 (97.8402%)	[B] Total reads after QC of (A)
R2		
R2	        1804180 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3350909 (92.8652%)	[B-3] Total mapped reads of (B-2)x2
R2	         257451 (7.1348%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1665911 (92.3362%)	[F] Total mapped reads of (B-2)
R2	         138269 (7.6638%)	[G] Total unmapped reads of (B-2)
R2	          20402 (1.1308%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1783778 (98.8692%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            989 (0.0548%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       554.441	[I-3] RPMH of (I-1)
R2	       548.171	[I-4] PPM of (I-1)
R2	     48475.640	[I-5] RPMU of (I-1)
R2	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.000	[I-7] RPMH of (I-6)
R2	         0.000	[I-8] PPM of (I-6)
R2	         0.000	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.1164	1.1085	156.6784	2	0	2	2.000	199	ALL_R1	bacteria	Sphingomonas	1.38e-09
<<
562.6837	558.7026	78965.9224	1008	0	1008	1008.000	100464	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.1212	1.1085	98.0296	2	0	2	2.000	200	ALL_R2	bacteria	Sphingomonas	6.06e-10
1.1212	1.1085	98.0296	2	0	2	2.000	198	ALL_R2	bacteria	Alcanivorax	8.41e-04
<<
551.0775	544.8459	48181.5508	983	0	983	983.000	98175	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.2329	2.2171	313.3568	4	0	4	4.000	400	R1U	viral	Lymphocryptovirus	n/a