# 2020/01/17 23:09:37
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR245014	Replication ID
# SRP000808	Sample ID
# ERR245014_1.filt	Read1
# ERR245014_2.filt	Read2
R1	        1641688 (100.0000%)	[A] Total raw reads
R1	        1612813 (98.2411%)	[B] Total reads after QC of (A)
R1		
R1	        1612813 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2981079 (92.4186%)	[B-3] Total mapped reads of (B-2)x2
R1	         244547 (7.5814%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1498794 (92.9304%)	[F] Total mapped reads of (B-2)
R1	         114019 (7.0696%)	[G] Total unmapped reads of (B-2)
R1	          13011 (0.8067%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1599802 (99.1933%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1575 (0.0977%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       984.497	[I-3] RPMH of (I-1)
R1	       976.555	[I-4] PPM of (I-1)
R1	    121051.418	[I-5] RPMU of (I-1)
R1	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         2.500	[I-7] RPMH of (I-6)
R1	         2.480	[I-8] PPM of (I-6)
R1	       307.432	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1641688 (100.0000%)	[A] Total raw reads
R2	        1612813 (98.2411%)	[B] Total reads after QC of (A)
R2		
R2	        1612813 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2981079 (92.4186%)	[B-3] Total mapped reads of (B-2)x2
R2	         244547 (7.5814%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1482285 (91.9068%)	[F] Total mapped reads of (B-2)
R2	         130528 (8.0932%)	[G] Total unmapped reads of (B-2)
R2	          19515 (1.2100%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1593298 (98.7900%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1554 (0.0964%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       975.335	[I-3] RPMH of (I-1)
R2	       963.534	[I-4] PPM of (I-1)
R2	     79631.053	[I-5] RPMU of (I-1)
R2	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         2.511	[I-7] RPMH of (I-6)
R2	         2.480	[I-8] PPM of (I-6)
R2	       204.971	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
984.4968	976.5546	121051.4180	1575	0	1575	1575.000	157140	ALL_R1	viral	Lymphocryptovirus	0.0
<<
972.8249	961.0538	79426.0825	1550	0	1550	1550.000	154758	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.5003	2.4801	307.4322	4	0	4	4.000	400	R1U	viral	Lymphocryptovirus	n/a	
<<
2.5105	2.4801	204.9705	4	0	4	4.000	400	R2U	viral	Lymphocryptovirus	n/a