# 2020/03/03 18:57:00
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243250	Replication ID
# SRP000547	Sample ID
# ERR243250_1.filt	Read1
# ERR243250_2.filt	Read2
R1	        1387255 (100.0000%)	[A] Total raw reads
R1	        1359014 (97.9643%)	[B] Total reads after QC of (A)
R1		
R1	        1359014 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2497025 (91.8690%)	[B-3] Total mapped reads of (B-2)x2
R1	         221003 (8.1310%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1255967 (92.4175%)	[F] Total mapped reads of (B-2)
R1	         103047 (7.5825%)	[G] Total unmapped reads of (B-2)
R1	          14119 (1.0389%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1344895 (98.9611%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           4317 (0.3177%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      3209.916	[I-3] RPMH of (I-1)
R1	      3176.568	[I-4] PPM of (I-1)
R1	    305758.198	[I-5] RPMU of (I-1)
R1	             16 (0.0012%)	[I-6] Total chimeric reads of (I-1)
R1	        11.897	[I-7] RPMH of (I-6)
R1	        11.773	[I-8] PPM of (I-6)
R1	      1133.225	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1387255 (100.0000%)	[A] Total raw reads
R2	        1359014 (97.9643%)	[B] Total reads after QC of (A)
R2		
R2	        1359014 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2497025 (91.8690%)	[B-3] Total mapped reads of (B-2)x2
R2	         221003 (8.1310%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1241058 (91.3205%)	[F] Total mapped reads of (B-2)
R2	         117956 (8.6795%)	[G] Total unmapped reads of (B-2)
R2	          20174 (1.4845%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1338840 (98.5155%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           4304 (0.3167%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      3214.723	[I-3] RPMH of (I-1)
R2	      3167.002	[I-4] PPM of (I-1)
R2	    213343.908	[I-5] RPMU of (I-1)
R2	             19 (0.0014%)	[I-6] Total chimeric reads of (I-1)
R2	        14.191	[I-7] RPMH of (I-6)
R2	        13.981	[I-8] PPM of (I-6)
R2	       941.806	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3207.6854	3174.3602	305545.7185	4314	0	4314	4314.000	430132	ALL_R1	viral	Lymphocryptovirus	0.0
<<
3212.4824	3164.7945	213195.2017	4301	0	4301	4301.000	428806	ALL_R2	viral	Lymphocryptovirus	0.0
<<
11.8968	11.7732	1133.2247	16	0	16	16.000	1598	R1U	viral	Lymphocryptovirus	n/a	
<<
14.1914	13.9807	941.8063	19	0	19	19.000	1893	R2U	viral	Lymphocryptovirus	n/a