# 2020/01/25 13:22:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243091	Replication ID
# SRP001294	Sample ID
# ERR243091_1.filt	Read1
# ERR243091_2.filt	Read2
R1	        1879179 (100.0000%)	[A] Total raw reads
R1	        1836992 (97.7550%)	[B] Total reads after QC of (A)
R1		
R1	        1836992 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3392123 (92.3282%)	[B-3] Total mapped reads of (B-2)x2
R1	         281861 (7.6718%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1710309 (93.1038%)	[F] Total mapped reads of (B-2)
R1	         126683 (6.8962%)	[G] Total unmapped reads of (B-2)
R1	          13368 (0.7277%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1823624 (99.2723%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            973 (0.0530%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       533.553	[I-3] RPMH of (I-1)
R1	       529.670	[I-4] PPM of (I-1)
R1	     72785.757	[I-5] RPMU of (I-1)
R1	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.097	[I-7] RPMH of (I-6)
R1	         1.089	[I-8] PPM of (I-6)
R1	       149.611	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1879179 (100.0000%)	[A] Total raw reads
R2	        1836992 (97.7550%)	[B] Total reads after QC of (A)
R2		
R2	        1836992 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3392123 (92.3282%)	[B-3] Total mapped reads of (B-2)x2
R2	         281861 (7.6718%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1681814 (91.5526%)	[F] Total mapped reads of (B-2)
R2	         155178 (8.4474%)	[G] Total unmapped reads of (B-2)
R2	          24777 (1.3488%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1812215 (98.6512%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            936 (0.0510%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       516.495	[I-3] RPMH of (I-1)
R2	       509.529	[I-4] PPM of (I-1)
R2	     37776.971	[I-5] RPMU of (I-1)
R2	              3 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.655	[I-7] RPMH of (I-6)
R2	         1.633	[I-8] PPM of (I-6)
R2	       121.080	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.0967	1.0887	149.6110	2	0	2	2.000	200	ALL_R1	bacteria	Ralstonia	5.39e-06
<<
530.2628	526.4040	72336.9240	967	0	967	967.000	96489	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.1036	1.0887	80.7200	2	0	2	2.000	200	ALL_R2	bacteria	Ralstonia	2.18e-06
<<
513.7360	506.8068	37575.1705	931	0	931	931.000	92827	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.0967	1.0887	149.6110	2	0	2	2.000	200	R1U	viral	Lymphocryptovirus	n/a	
<<
1.1036	1.0887	80.7200	2	0	2	2.000	200	R2U	viral	Lymphocryptovirus	n/a	
0.5518	0.5444	40.3600	1	0	1	1.000	98	R2U	viral	Phix174microvirus	n/a