# 2020/01/25 00:45:37
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242963	Replication ID
# SRP001294	Sample ID
# ERR242963_1.filt	Read1
# ERR242963_2.filt	Read2
R1	        1887933 (100.0000%)	[A] Total raw reads
R1	        1847182 (97.8415%)	[B] Total reads after QC of (A)
R1		
R1	        1847182 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3424289 (92.6895%)	[B-3] Total mapped reads of (B-2)x2
R1	         270075 (7.3105%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1722811 (93.2670%)	[F] Total mapped reads of (B-2)
R1	         124371 (6.7330%)	[G] Total unmapped reads of (B-2)
R1	          12978 (0.7026%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1834204 (99.2974%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            986 (0.0534%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       537.563	[I-3] RPMH of (I-1)
R1	       533.786	[I-4] PPM of (I-1)
R1	     75974.727	[I-5] RPMU of (I-1)
R1	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.545	[I-7] RPMH of (I-6)
R1	         0.541	[I-8] PPM of (I-6)
R1	        77.053	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1887933 (100.0000%)	[A] Total raw reads
R2	        1847182 (97.8415%)	[B] Total reads after QC of (A)
R2		
R2	        1847182 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3424289 (92.6895%)	[B-3] Total mapped reads of (B-2)x2
R2	         270075 (7.3105%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1701478 (92.1121%)	[F] Total mapped reads of (B-2)
R2	         145704 (7.8879%)	[G] Total unmapped reads of (B-2)
R2	          21917 (1.1865%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1825265 (98.8135%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            949 (0.0514%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       519.924	[I-3] RPMH of (I-1)
R2	       513.756	[I-4] PPM of (I-1)
R2	     43299.722	[I-5] RPMU of (I-1)
R2	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.096	[I-7] RPMH of (I-6)
R2	         1.083	[I-8] PPM of (I-6)
R2	        91.253	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
535.3821	531.6206	75666.5126	982	0	982	982.000	97889	ALL_R1	viral	Lymphocryptovirus	0.0
<<
517.1852	511.0487	43071.5883	944	0	944	944.000	94007	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.5452	0.5414	77.0535	1	0	1	1.000	100	R1U	viral	Lymphocryptovirus	n/a	
<<
1.0957	1.0827	91.2534	2	0	2	2.000	199	R2U	viral	Lymphocryptovirus	n/a