# 2020/02/18 04:29:14
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR240595	Replication ID
# SRP000808	Sample ID
# ERR240595_1.filt	Read1
# ERR240595_2.filt	Read2
R1	        1900563 (100.0000%)	[A] Total raw reads
R1	        1865210 (98.1399%)	[B] Total reads after QC of (A)
R1		
R1	        1865210 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3454663 (92.6079%)	[B-3] Total mapped reads of (B-2)x2
R1	         275757 (7.3921%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1741603 (93.3730%)	[F] Total mapped reads of (B-2)
R1	         123607 (6.6270%)	[G] Total unmapped reads of (B-2)
R1	          12707 (0.6813%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1852503 (99.3187%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1372 (0.0736%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       740.620	[I-3] RPMH of (I-1)
R1	       735.574	[I-4] PPM of (I-1)
R1	    107971.984	[I-5] RPMU of (I-1)
R1	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.080	[I-7] RPMH of (I-6)
R1	         1.072	[I-8] PPM of (I-6)
R1	       157.394	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1900563 (100.0000%)	[A] Total raw reads
R2	        1865210 (98.1399%)	[B] Total reads after QC of (A)
R2		
R2	        1865210 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3454663 (92.6079%)	[B-3] Total mapped reads of (B-2)x2
R2	         275757 (7.3921%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1713060 (91.8427%)	[F] Total mapped reads of (B-2)
R2	         152150 (8.1573%)	[G] Total unmapped reads of (B-2)
R2	          24286 (1.3021%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1840924 (98.6979%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1368 (0.0733%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       743.105	[I-3] RPMH of (I-1)
R2	       733.429	[I-4] PPM of (I-1)
R2	     56328.749	[I-5] RPMU of (I-1)
R2	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.086	[I-7] RPMH of (I-6)
R2	         1.072	[I-8] PPM of (I-6)
R2	        82.352	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
739.5400	734.5017	107814.5904	1370	0	1370	1370.000	136717	ALL_R1	viral	Lymphocryptovirus	0.0
<<
742.0187	732.3572	56246.3971	1366	0	1366	1366.000	136253	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.0796	1.0723	157.3936	2	0	2	2.000	199	R1U	viral	Lymphocryptovirus	n/a	
<<
1.0864	1.0723	82.3520	2	0	2	2.000	200	R2U	viral	Lymphocryptovirus	n/a