# 2020/02/18 01:44:50
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR240563	Replication ID
# SRP000808	Sample ID
# ERR240563_1.filt	Read1
# ERR240563_2.filt	Read2
R1	        1948272 (100.0000%)	[A] Total raw reads
R1	        1913070 (98.1932%)	[B] Total reads after QC of (A)
R1		
R1	        1913070 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3557276 (92.9730%)	[B-3] Total mapped reads of (B-2)x2
R1	         268864 (7.0270%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1788793 (93.5038%)	[F] Total mapped reads of (B-2)
R1	         124277 (6.4962%)	[G] Total unmapped reads of (B-2)
R1	          13069 (0.6831%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1900001 (99.3169%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1469 (0.0768%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       773.157	[I-3] RPMH of (I-1)
R1	       767.876	[I-4] PPM of (I-1)
R1	    112403.397	[I-5] RPMU of (I-1)
R1	              3 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.579	[I-7] RPMH of (I-6)
R1	         1.568	[I-8] PPM of (I-6)
R1	       229.551	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1948272 (100.0000%)	[A] Total raw reads
R2	        1913070 (98.1932%)	[B] Total reads after QC of (A)
R2		
R2	        1913070 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3557276 (92.9730%)	[B-3] Total mapped reads of (B-2)x2
R2	         268864 (7.0270%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1768483 (92.4421%)	[F] Total mapped reads of (B-2)
R2	         144587 (7.5579%)	[G] Total unmapped reads of (B-2)
R2	          21063 (1.1010%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1892007 (98.8990%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1421 (0.0743%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       751.054	[I-3] RPMH of (I-1)
R2	       742.785	[I-4] PPM of (I-1)
R2	     67464.274	[I-5] RPMU of (I-1)
R2	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.000	[I-7] RPMH of (I-6)
R2	         0.000	[I-8] PPM of (I-6)
R2	         0.000	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
772.6312	767.3530	112326.8804	1468	0	1468	1468.000	146415	ALL_R1	viral	Lymphocryptovirus	0.0
<<
749.9972	741.7397	67369.3206	1419	0	1419	1419.000	141399	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.5789	1.5682	229.5508	3	0	3	3.000	298	R1U	viral	Lymphocryptovirus	n/a