# 2020/02/11 06:35:04 # HUMAN Target (Host) organism # DNA Sequencing source # ERR018411 Replication ID # SRP000808 Sample ID # ERR018411_1.filt Read1 # ERR018411_2.filt Read2 R1 86342189 (100.0000%) [A] Total raw reads R1 70018457 (81.0941%) [B] Total reads after QC of (A) R1 R1 70018457 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 128541838 (91.7914%) [B-3] Total mapped reads of (B-2)x2 R1 11495076 (8.2086%) [B-4] Total unmapped reads of (B-2)x2 R1 64429923 (92.0185%) [F] Total mapped reads of (B-2) R1 5588534 (7.9815%) [G] Total unmapped reads of (B-2) R1 369080 (0.5271%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 69649377 (99.4729%) [J] Total mapped reads to host genome ( (B-2)-H) R1 102405 (0.1463%) [I-1] Total mapped reads of (H) to exo. genomes R1 1470.293 [I-3] RPMH of (I-1) R1 1462.543 [I-4] PPM of (I-1) R1 277460.171 [I-5] RPMU of (I-1) R1 746 (0.0011%) [I-6] Total chimeric reads of (I-1) R1 10.711 [I-7] RPMH of (I-6) R1 10.654 [I-8] PPM of (I-6) R1 2021.242 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 86342189 (100.0000%) [A] Total raw reads R2 70018457 (81.0941%) [B] Total reads after QC of (A) R2 R2 70018457 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 128541838 (91.7914%) [B-3] Total mapped reads of (B-2)x2 R2 11495076 (8.2086%) [B-4] Total unmapped reads of (B-2)x2 R2 64111915 (91.5643%) [F] Total mapped reads of (B-2) R2 5906542 (8.4357%) [G] Total unmapped reads of (B-2) R2 482200 (0.6887%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 69536257 (99.3113%) [J] Total mapped reads to host genome ( (B-2)-H) R2 100777 (0.1439%) [I-1] Total mapped reads of (H) to exo. genomes R2 1449.273 [I-3] RPMH of (I-1) R2 1439.292 [I-4] PPM of (I-1) R2 208994.193 [I-5] RPMU of (I-1) R2 583 (0.0008%) [I-6] Total chimeric reads of (I-1) R2 8.384 [I-7] RPMH of (I-6) R2 8.326 [I-8] PPM of (I-6) R2 1209.042 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 4.4815 4.4579 845.7055 619 487 132 312.133 30357 ALL_R1 bacteria Alcanivorax 2.59e-20 << 1458.0173 1450.3319 275143.6003 101550 0 101550 101550.000 4970609 ALL_R1 viral Lymphocryptovirus 0.0 << 3.4874 3.4634 502.9075 505 416 89 242.502 24515 ALL_R2 bacteria Alcanivorax 2.58e-07 << 1439.0322 1429.1219 207517.4471 100075 16 100059 100064.913 4866738 ALL_R2 viral Lymphocryptovirus 0.0 << 0.3466 0.3447 65.3977 38 22 16 24.137 1848 R1U bacteria Alcanivorax n/a 0.3322 0.3304 62.6883 37 22 15 23.137 1778 R1U bacteria Eubacterium n/a 0.0431 0.0428 8.1283 3 0 3 3.000 150 R1U bacteria Tetrasphaera n/a 0.0166 0.0165 3.1321 3 2 1 1.156 149 R1U bacteria Bacillus n/a 0.0144 0.0143 2.7094 1 0 1 1.000 50 R1U bacteria Sphingobium n/a 0.0144 0.0143 2.7094 1 0 1 1.000 50 R1U bacteria Pseudomonas n/a 0.0144 0.0143 2.7094 1 0 1 1.000 50 R1U bacteria Paraburkholderia n/a 0.0144 0.0143 2.7094 1 0 1 1.000 50 R1U bacteria Methylophilus n/a 0.0144 0.0143 2.7094 1 0 1 1.000 47 R1U bacteria Stenotrophomonas n/a << 0.0861 0.0857 16.2566 6 0 6 6.000 289 R1U fungi Malassezia n/a << 9.6340 9.5832 1818.0340 671 0 671 671.000 32774 R1U viral Lymphocryptovirus n/a << 0.2798 0.2779 40.3484 39 31 8 19.456 1902 R2U bacteria Eubacterium n/a 0.2276 0.2260 32.8204 36 32 4 15.826 1738 R2U bacteria Alcanivorax n/a 0.0288 0.0286 4.1477 2 0 2 2.000 88 R2U bacteria Acinetobacter n/a 0.0197 0.0196 2.8411 2 1 1 1.370 100 R2U bacteria Tetrasphaera n/a 0.0144 0.0143 2.0738 1 0 1 1.000 50 R2U bacteria Pseudomonas n/a 0.0144 0.0143 2.0738 1 0 1 1.000 50 R2U bacteria Leifsonia n/a << 0.0575 0.0571 8.2953 4 0 4 4.000 200 R2U fungi Malassezia n/a 0.0144 0.0143 2.0738 1 0 1 1.000 37 R2U fungi Melampsora n/a << 7.5069 7.4552 1082.5384 522 0 522 522.000 25489 R2U viral Lymphocryptovirus n/a