# 2020/01/22 22:12:06
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR018402	Replication ID
# SRP001294	Sample ID
# ERR018402_1.filt	Read1
# ERR018402_2.filt	Read2
R1	       31897561 (100.0000%)	[A] Total raw reads
R1	       26298176 (82.4457%)	[B] Total reads after QC of (A)
R1		
R1	       26298176 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       48904589 (92.9810%)	[B-3] Total mapped reads of (B-2)x2
R1	        3691763 (7.0190%)	[B-4] Total unmapped reads of (B-2)x2
R1	       24484465 (93.1033%)	[F] Total mapped reads of (B-2)
R1	        1813711 (6.8967%)	[G] Total unmapped reads of (B-2)
R1	         190770 (0.7254%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       26107406 (99.2746%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          12151 (0.0462%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       465.423	[I-3] RPMH of (I-1)
R1	       462.047	[I-4] PPM of (I-1)
R1	     63694.501	[I-5] RPMU of (I-1)
R1	             68 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.605	[I-7] RPMH of (I-6)
R1	         2.586	[I-8] PPM of (I-6)
R1	       356.450	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       31897561 (100.0000%)	[A] Total raw reads
R2	       26298176 (82.4457%)	[B] Total reads after QC of (A)
R2		
R2	       26298176 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       48904589 (92.9810%)	[B-3] Total mapped reads of (B-2)x2
R2	        3691763 (7.0190%)	[B-4] Total unmapped reads of (B-2)x2
R2	       24420124 (92.8586%)	[F] Total mapped reads of (B-2)
R2	        1878052 (7.1414%)	[G] Total unmapped reads of (B-2)
R2	         199279 (0.7578%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       26098897 (99.2422%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          12049 (0.0458%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       461.667	[I-3] RPMH of (I-1)
R2	       458.169	[I-4] PPM of (I-1)
R2	     60462.969	[I-5] RPMU of (I-1)
R2	             50 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.916	[I-7] RPMH of (I-6)
R2	         1.901	[I-8] PPM of (I-6)
R2	       250.904	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
7.4591	7.4050	1020.7999	196	2	194	194.738	19229	ALL_R1	bacteria	Bacillus	0.0
1.4381	1.4277	196.8077	59	34	25	37.545	4734	ALL_R1	bacteria	Alcanivorax	1.13e-26
<<
455.0050	451.7043	62268.7005	11879	0	11879	11879.000	1043642	ALL_R1	viral	Lymphocryptovirus	0.0
<<
7.2410	7.1861	948.3287	193	6	187	188.982	18095	ALL_R2	bacteria	Streptomyces	0.0
1.2131	1.2039	158.8778	55	37	18	31.661	3692	ALL_R2	bacteria	Alcanivorax	2.28e-13
<<
451.1302	447.7117	59082.9942	11774	0	11774	11774.000	962449	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.4131	2.3956	330.2406	63	0	63	63.000	5511	R1U	viral	Lymphocryptovirus	n/a	
<<
1.8392	1.8252	240.8683	48	0	48	48.000	3697	R2U	viral	Lymphocryptovirus	n/a