#Unique_Reads Genus Species # 48 reads uniquely mapped to Acidocella (multi-hits among diff. species in Acidocella allowed) 28 Acidocella Acidocella aminolytica 101 = DSM 11237 20 Acidocella Acidocella facilis ATCC 35904 # 65 reads uniquely mapped to Acidovorax (multi-hits among diff. species in Acidovorax allowed) 14 Acidovorax Acidovorax sp. KKS102 11 Acidovorax Acidovorax sp. RAC01 8 Acidovorax Acidovorax citrulli AAC00-1 8 Acidovorax Acidovorax ebreus TPSY 6 Acidovorax Acidovorax caeni 5 Acidovorax Acidovorax sp. JS42 5 Acidovorax Acidovorax sp. Root217 5 Acidovorax Acidovorax avenae subsp. avenae ATCC 19860 2 Acidovorax Acidovorax sp. Leaf160 1 Acidovorax Acidovorax radicis N35 # 116 reads uniquely mapped to Acinetobacter (multi-hits among diff. species in Acinetobacter allowed) 44 Acinetobacter Acinetobacter baumannii 7 Acinetobacter Acinetobacter johnsonii XBB1 7 Acinetobacter Acinetobacter lwoffii NCTC 5866 = CIP 64.10 = NIPH 512 7 Acinetobacter Acinetobacter sp. TGL-Y2 6 Acinetobacter Acinetobacter beijerinckii CIP 110307 5 Acinetobacter Acinetobacter harbinensis 4 Acinetobacter Acinetobacter junii 4 Acinetobacter Acinetobacter nectaris CIP 110549 4 Acinetobacter Acinetobacter sp. TTH0-4 3 Acinetobacter Acinetobacter nosocomialis 3 Acinetobacter NC_011586 3 Acinetobacter Acinetobacter bereziniae LMG 1003 = CIP 70.12 2 Acinetobacter Acinetobacter towneri 2 Acinetobacter Acinetobacter baumannii 1656-2 2 Acinetobacter Acinetobacter indicus CIP 110367 2 Acinetobacter Acinetobacter pittii 2 Acinetobacter Acinetobacter bohemicus ANC 3994 2 Acinetobacter Acinetobacter parvus DSM 16617 = CIP 108168 2 Acinetobacter Acinetobacter brisouii CIP 110357 1 Acinetobacter Acinetobacter tandoii DSM 14970 = CIP 107469 1 Acinetobacter Acinetobacter baumannii TYTH-1 1 Acinetobacter Acinetobacter larvae 1 Acinetobacter Acinetobacter ursingii DSM 16037 = CIP 107286 1 Acinetobacter Acinetobacter sp. NCu2D-2 # 34 reads uniquely mapped to Actinobaculum (multi-hits among diff. species in Actinobaculum allowed) 24 Actinobaculum Actinobaculum massiliense ACS-171-V-Col2 6 Actinobaculum Actinobaculum sp. oral taxon 183 str. F0552 4 Actinobaculum Actinobaculum suis # 50 reads uniquely mapped to Actinomyces (multi-hits among diff. species in Actinomyces allowed) 7 Actinomyces Actinomyces sp. VUL4_3 6 Actinomyces Actinomyces europaeus ACS-120-V-Col10b 3 Actinomyces Actinomyces meyeri 3 Actinomyces Actinomyces neuii subsp. neuii DSM 8576 3 Actinomyces Actinomyces oris 3 Actinomyces Actinomyces coleocanis DSM 15436 3 Actinomyces Actinomyces sp. oral taxon 848 str. F0332 3 Actinomyces Actinomyces johnsonii F0542 3 Actinomyces Actinomyces polynesiensis 2 Actinomyces Actinomyces urogenitalis DSM 15434 2 Actinomyces Actinomyces suimastitidis DSM 15538 2 Actinomyces Actinomyces sp. Marseille-P2985 2 Actinomyces Actinomyces odontolyticus ATCC 17982 2 Actinomyces Actinomyces cardiffensis F0333 2 Actinomyces Actinomyces turicensis ACS-279-V-Col4 1 Actinomyces Actinomyces massiliensis 4401292 1 Actinomyces Actinomyces graevenitzii C83 1 Actinomyces Actinomyces sp. oral taxon 414 1 Actinomyces Actinomyces hongkongensis # 40 reads uniquely mapped to Actinotalea (multi-hits among diff. species in Actinotalea allowed) 40 Actinotalea Actinotalea ferrariae CF5-4 # 72 reads uniquely mapped to Aeromonas (multi-hits among diff. species in Aeromonas allowed) 17 Aeromonas Aeromonas hydrophila 11 Aeromonas Aeromonas schubertii 8 Aeromonas Aeromonas hydrophila YL17 6 Aeromonas Aeromonas hydrophila subsp. hydrophila ATCC 7966 5 Aeromonas Aeromonas veronii 5 Aeromonas Aeromonas aquatica 4 Aeromonas Aeromonas hydrophila pc104A 4 Aeromonas Aeromonas hydrophila AL09-71 4 Aeromonas Aeromonas hydrophila NJ-35 2 Aeromonas Aeromonas hydrophila J-1 2 Aeromonas Aeromonas salmonicida subsp. salmonicida A449 1 Aeromonas Aeromonas media WS 1 Aeromonas Aeromonas hydrophila 4AK4 1 Aeromonas Aeromonas hydrophila ML09-119 1 Aeromonas Aeromonas eucrenophila # 45 reads uniquely mapped to Afipia (multi-hits among diff. species in Afipia allowed) 12 Afipia Afipia broomeae ATCC 49717 10 Afipia Afipia birgiae 34632 7 Afipia Afipia sp. Root123D2 7 Afipia Afipia sp. P52-10 5 Afipia Afipia felis ATCC 53690 4 Afipia Afipia clevelandensis ATCC 49720 # 64 reads uniquely mapped to Alkalilimnicola (multi-hits among diff. species in Alkalilimnicola allowed) 64 Alkalilimnicola Alkalilimnicola ehrlichii MLHE-1 # 7 reads uniquely mapped to Alloprevotella (multi-hits among diff. species in Alloprevotella allowed) 5 Alloprevotella Alloprevotella rava F0323 2 Alloprevotella Alloprevotella tannerae ATCC 51259 # 92 reads uniquely mapped to Anaerococcus (multi-hits among diff. species in Anaerococcus allowed) 28 Anaerococcus Anaerococcus prevotii DSM 20548 18 Anaerococcus Anaerococcus mediterraneensis 15 Anaerococcus Anaerococcus tetradius ATCC 35098 8 Anaerococcus Anaerococcus prevotii ACS-065-V-Col13 7 Anaerococcus Anaerococcus obesiensis ph10 6 Anaerococcus Anaerococcus hydrogenalis DSM 7454 6 Anaerococcus Anaerococcus provenciensis 2 Anaerococcus Anaerococcus lactolyticus ATCC 51172 2 Anaerococcus Anaerococcus pacaensis 9403502 # 21 reads uniquely mapped to Anaeromyxobacter (multi-hits among diff. species in Anaeromyxobacter allowed) 10 Anaeromyxobacter Anaeromyxobacter dehalogenans 2CP-1 6 Anaeromyxobacter Anaeromyxobacter dehalogenans 2CP-C 3 Anaeromyxobacter Anaeromyxobacter sp. Fw109-5 2 Anaeromyxobacter Anaeromyxobacter sp. K # 7204 reads uniquely mapped to Arthrobacter (multi-hits among diff. species in Arthrobacter allowed) 7088 Arthrobacter Arthrobacter sp. L77 65 Arthrobacter Arthrobacter sp. IHBB 11108 10 Arthrobacter Arthrobacter sp. YC-RL1 9 Arthrobacter Arthrobacter sp. LS16 8 Arthrobacter Arthrobacter globiformis NBRC 12137 3 Arthrobacter Arthrobacter sp. QXT-31 3 Arthrobacter Arthrobacter sp. ZXY-2 3 Arthrobacter Arthrobacter alpinus 2 Arthrobacter Arthrobacter sp. H20 2 Arthrobacter Arthrobacter sp. U41 2 Arthrobacter Arthrobacter sp. Soil763 2 Arthrobacter Arthrobacter sp. H14 1 Arthrobacter Arthrobacter sp. ERGS1:01 1 Arthrobacter Arthrobacter sp. H5 1 Arthrobacter Arthrobacter sp. FB24 1 Arthrobacter Arthrobacter sp. Hiyo1 1 Arthrobacter Arthrobacter sp. ATCC 21022 1 Arthrobacter Arthrobacter sp. PAMC 25486 1 Arthrobacter Arthrobacter castelli DSM 16402 # 27 reads uniquely mapped to Atopobium (multi-hits among diff. species in Atopobium allowed) 7 Atopobium Atopobium vaginae PB189-T1-4 6 Atopobium Atopobium sp. oral taxon 199 str. F0494 5 Atopobium Atopobium minutum 3 Atopobium Atopobium vaginae DSM 15829 3 Atopobium Atopobium fossor DSM 15642 2 Atopobium Atopobium rimae ATCC 49626 1 Atopobium Atopobium parvulum DSM 20469 # 88 reads uniquely mapped to Azotobacter (multi-hits among diff. species in Azotobacter allowed) 34 Azotobacter Azotobacter chroococcum NCIMB 8003 21 Azotobacter Azotobacter vinelandii CA6 17 Azotobacter Azotobacter vinelandii DJ 16 Azotobacter Azotobacter vinelandii CA # 189 reads uniquely mapped to Bacillus (multi-hits among diff. species in Bacillus allowed) 71 Bacillus Bacillus subtilis BSn5 24 Bacillus Bacillus weihenstephanensis 16 Bacillus Bacillus subtilis BEST7003 8 Bacillus Bacillus anthracis 4 Bacillus Bacillus sp. FJAT-25496 3 Bacillus Bacillus pumilus 3 Bacillus Bacillus sp. IHB B 7164 3 Bacillus Bacillus amyloliquefaciens 3 Bacillus Bacillus clausii 3 Bacillus Bacillus megaterium QM B1551 3 Bacillus Bacillus megaterium NBRC 15308 = ATCC 14581 3 Bacillus Bacillus humi 2 Bacillus Bacillus cecembensis 2 Bacillus Bacillus bataviensis LMG 21833 2 Bacillus Bacillus lehensis G1 2 Bacillus Bacillus megaterium Q3 2 Bacillus Bacillus cereus 2 Bacillus Bacillus smithii 2 Bacillus Bacillus sp. FJAT-18019 2 Bacillus Bacillus megaterium 1 Bacillus Bacillus cereus G9842 1 Bacillus Bacillus paralicheniformis ATCC 9945a 1 Bacillus Bacillus massiliogorillae 1 Bacillus Bacillus anthracis str. CDC 684 1 Bacillus Bacillus licheniformis 1 Bacillus Bacillus amyloliquefaciens IT-45 1 Bacillus Bacillus coagulans 1 Bacillus Bacillus velezensis 1 Bacillus Bacillus ndiopicus 1 Bacillus Bacillus cereus ATCC 4342 1 Bacillus Bacillus clausii KSM-K16 1 Bacillus Bacillus oceanisediminis 2691 1 Bacillus Bacillus sp. FJAT-26652 1 Bacillus Bacillus mycoides 1 Bacillus Bacillus cereus biovar anthracis str. CI 1 Bacillus Bacillus subtilis subsp. subtilis 1 Bacillus Bacillus endophyticus 1 Bacillus Bacillus sp. Pc3 1 Bacillus Bacillus aurantiacus DSM 18675 1 Bacillus Bacillus cellulosilyticus DSM 2522 1 Bacillus Bacillus solani 1 Bacillus Bacillus coagulans 2-6 1 Bacillus Bacillus subtilis subsp. subtilis str. BSP1 1 Bacillus Bacillus safensis 1 Bacillus Bacillus xiamenensis 1 Bacillus Bacillus coahuilensis m4-4 1 Bacillus Bacillus sp. FJAT-27916 1 Bacillus Bacillus manliponensis 1 Bacillus Bacillus sp. FJAT-18017 # 7 reads uniquely mapped to Bacteroides (multi-hits among diff. species in Bacteroides allowed) 2 Bacteroides Bacteroides fragilis YCH46 2 Bacteroides Bacteroides thetaiotaomicron VPI-5482 1 Bacteroides Bacteroides salyersiae WAL 10018 = DSM 18765 = JCM 12988 1 Bacteroides Bacteroides plebeius DSM 17135 1 Bacteroides Bacteroides salanitronis DSM 18170 # 75 reads uniquely mapped to Balneatrix (multi-hits among diff. species in Balneatrix allowed) 75 Balneatrix Balneatrix alpica DSM 16621 # 6126 reads uniquely mapped to Bavariicoccus (multi-hits among diff. species in Bavariicoccus allowed) 6126 Bavariicoccus Bavariicoccus seileri DSM 19936 # 35 reads uniquely mapped to Belnapia (multi-hits among diff. species in Belnapia allowed) 35 Belnapia Belnapia moabensis DSM 16746 # 42 reads uniquely mapped to Bifidobacterium (multi-hits among diff. species in Bifidobacterium allowed) 11 Bifidobacterium Bifidobacterium longum subsp. longum 3 Bifidobacterium Bifidobacterium gallicum DSM 20093 = LMG 11596 3 Bifidobacterium Bifidobacterium actinocoloniiforme DSM 22766 2 Bifidobacterium Bifidobacterium longum subsp. longum KACC 91563 2 Bifidobacterium Bifidobacterium cuniculi 2 Bifidobacterium Bifidobacterium angulatum DSM 20098 = JCM 7096 2 Bifidobacterium Bifidobacterium coryneforme 2 Bifidobacterium Bifidobacterium breve 2 Bifidobacterium Bifidobacterium minimum 2 Bifidobacterium Bifidobacterium biavatii DSM 23969 1 Bifidobacterium Bifidobacterium longum DJO10A 1 Bifidobacterium Bifidobacterium indicum LMG 11587 = DSM 20214 1 Bifidobacterium Bifidobacterium scardovii JCM 12489 = DSM 13734 1 Bifidobacterium Bifidobacterium subtile 1 Bifidobacterium Bifidobacterium dentium JCM 1195 = DSM 20436 1 Bifidobacterium Bifidobacterium asteroides PRL2011 1 Bifidobacterium Bifidobacterium longum NCC2705 1 Bifidobacterium Bifidobacterium animalis subsp. lactis CNCM I-2494 1 Bifidobacterium Bifidobacterium crudilactis 1 Bifidobacterium Bifidobacterium bifidum 1 Bifidobacterium Bifidobacterium breve ACS-071-V-Sch8b # 34 reads uniquely mapped to Brachybacterium (multi-hits among diff. species in Brachybacterium allowed) 9 Brachybacterium Brachybacterium sp. P6-10-X1 7 Brachybacterium Brachybacterium faecium DSM 4810 6 Brachybacterium Brachybacterium paraconglomeratum LC44 5 Brachybacterium Brachybacterium phenoliresistens 4 Brachybacterium Brachybacterium squillarum M-6-3 3 Brachybacterium Brachybacterium muris UCD-AY4 # 46 reads uniquely mapped to Bradyrhizobium (multi-hits among diff. species in Bradyrhizobium allowed) 4 Bradyrhizobium Bradyrhizobium sp. S23321 4 Bradyrhizobium Bradyrhizobium valentinum 4 Bradyrhizobium Bradyrhizobium japonicum USDA 6 3 Bradyrhizobium Bradyrhizobium oligotrophicum S58 3 Bradyrhizobium Bradyrhizobium sp. ORS 278 3 Bradyrhizobium Bradyrhizobium sp. Tv2a-2 3 Bradyrhizobium Bradyrhizobium sp. AS23.2 3 Bradyrhizobium Bradyrhizobium diazoefficiens 3 Bradyrhizobium Bradyrhizobium japonicum 3 Bradyrhizobium Bradyrhizobium elkanii WSM2783 2 Bradyrhizobium Bradyrhizobium sp. STM 3843 2 Bradyrhizobium Bradyrhizobium sp. CCGE-LA001 2 Bradyrhizobium Bradyrhizobium elkanii USDA 76 2 Bradyrhizobium Bradyrhizobium sp. URHD0069 2 Bradyrhizobium Bradyrhizobium sp. LTSP885 1 Bradyrhizobium Bradyrhizobium sp. 1 Bradyrhizobium Bradyrhizobium lablabi 1 Bradyrhizobium Bradyrhizobium neotropicale # 62 reads uniquely mapped to Brevundimonas (multi-hits among diff. species in Brevundimonas allowed) 25 Brevundimonas Brevundimonas diminuta ATCC 11568 9 Brevundimonas Brevundimonas aveniformis DSM 17977 7 Brevundimonas Brevundimonas naejangsanensis 5 Brevundimonas Brevundimonas sp. Leaf363 4 Brevundimonas Brevundimonas sp. LM2 3 Brevundimonas Brevundimonas bacteroides DSM 4726 3 Brevundimonas Brevundimonas sp. Root608 2 Brevundimonas Brevundimonas sp. Root1279 2 Brevundimonas Brevundimonas subvibrioides ATCC 15264 1 Brevundimonas Brevundimonas nasdae 1 Brevundimonas Brevundimonas sp. DS20 # 25 reads uniquely mapped to Brochothrix (multi-hits among diff. species in Brochothrix allowed) 15 Brochothrix Brochothrix campestris FSL F6-1037 10 Brochothrix Brochothrix thermosphacta DSM 20171 = FSL F6-1036 # 295 reads uniquely mapped to Burkholderia (multi-hits among diff. species in Burkholderia allowed) 208 Burkholderia Candidatus Burkholderia crenata 9 Burkholderia Burkholderia sp. OLGA172 6 Burkholderia Burkholderia sp. HB1 5 Burkholderia Burkholderia cenocepacia 5 Burkholderia Burkholderia vietnamiensis 4 Burkholderia Burkholderia pseudomallei 4 Burkholderia Burkholderia cenocepacia J2315 4 Burkholderia Burkholderia sp. RPE67 3 Burkholderia Burkholderia sp. PAMC 28687 2 Burkholderia Burkholderia sp. RPE64 2 Burkholderia Burkholderia seminalis 2 Burkholderia Burkholderia dolosa AU0158 2 Burkholderia Burkholderia vietnamiensis LMG 10929 2 Burkholderia Burkholderia sp. CCGE1003 2 Burkholderia Burkholderia pseudomallei 576 2 Burkholderia Burkholderia pseudomallei HBPUB10134a 2 Burkholderia Burkholderia mallei 2 Burkholderia Burkholderia ambifaria MC40-6 2 Burkholderia Burkholderia stabilis 1 Burkholderia Burkholderia thailandensis MSMB59 1 Burkholderia Burkholderia mallei NCTC 10229 1 Burkholderia Burkholderia sp. Bp7605 1 Burkholderia Burkholderia diffusa 1 Burkholderia Burkholderia sp. CCGE1001 1 Burkholderia Burkholderia pseudomallei MSHR511 1 Burkholderia Burkholderia ubonensis 1 Burkholderia Burkholderia pseudomallei 1106a 1 Burkholderia Burkholderia lata 1 Burkholderia Burkholderia sp. CCGE1002 1 Burkholderia Burkholderia gladioli 1 Burkholderia Burkholderia thailandensis 2002721723 1 Burkholderia Burkholderia cenocepacia HI2424 1 Burkholderia Burkholderia metallica 1 Burkholderia Burkholderia thailandensis E264 1 Burkholderia Burkholderia multivorans 1 Burkholderia Burkholderia pseudomallei K42 1 Burkholderia Burkholderia pseudomallei TSV 48 1 Burkholderia Burkholderia cenocepacia AU 1054 1 Burkholderia Burkholderia gladioli BSR3 1 Burkholderia Burkholderia pseudomallei Pasteur 52237 1 Burkholderia Burkholderia pseudomultivorans 1 Burkholderia Burkholderia sp. PAMC 26561 1 Burkholderia Burkholderia cepacia 1 Burkholderia Burkholderia latens 1 Burkholderia Burkholderia sp. YI23 1 Burkholderia NZ_CP016636 # 67 reads uniquely mapped to Caenimonas (multi-hits among diff. species in Caenimonas allowed) 67 Caenimonas Caenimonas sp. SL110 # 9395 reads uniquely mapped to Campylobacter (multi-hits among diff. species in Campylobacter allowed) 9313 Campylobacter Campylobacter mucosalis 15 Campylobacter Campylobacter jejuni 10 Campylobacter Campylobacter jejuni subsp. jejuni PT14 10 Campylobacter Campylobacter jejuni subsp. jejuni 9 Campylobacter Campylobacter coli 2 Campylobacter Campylobacter subantarcticus LMG 24374 2 Campylobacter Campylobacter lari RM16701 2 Campylobacter Campylobacter gracilis 2 Campylobacter Campylobacter jejuni subsp. jejuni 00-2544 2 Campylobacter Campylobacter coli RM1875 2 Campylobacter Campylobacter sp. RM16704 2 Campylobacter Campylobacter jejuni 32488 1 Campylobacter Campylobacter cuniculorum DSM 23162 = LMG 24588 1 Campylobacter Campylobacter sp. MIT 97-5078 1 Campylobacter Campylobacter pinnipediorum subsp. pinnipediorum 1 Campylobacter Campylobacter lari RM16712 1 Campylobacter Campylobacter jejuni subsp. jejuni S3 1 Campylobacter Campylobacter jejuni subsp. jejuni 00-2538 1 Campylobacter Campylobacter jejuni subsp. jejuni 81116 1 Campylobacter NZ_CP011777 1 Campylobacter Campylobacter coli CVM N29710 1 Campylobacter Campylobacter sputorum biovar sputorum 1 Campylobacter Campylobacter hyointestinalis subsp. lawsonii 1 Campylobacter Campylobacter jejuni subsp. jejuni str. RM3420 1 Campylobacter Campylobacter concisus 1 Campylobacter Campylobacter lari CCUG 22395 1 Campylobacter Campylobacter lari subsp. concheus LMG 11760 1 Campylobacter Campylobacter jejuni subsp. jejuni NCTC 11168-Kf1 1 Campylobacter Campylobacter lari NCTC 11845 1 Campylobacter Campylobacter insulaenigrae NCTC 12927 1 Campylobacter Campylobacter ureolyticus RIGS 9880 1 Campylobacter Campylobacter peloridis LMG 23910 1 Campylobacter Campylobacter jejuni subsp. jejuni R14 1 Campylobacter Campylobacter upsaliensis DSM 5365 1 Campylobacter Campylobacter showae CSUNSWCD 1 Campylobacter Campylobacter concisus 13826 # 586 reads uniquely mapped to Candidatus_Paracaedibacter (multi-hits among diff. species in Candidatus_Paracaedibacter allowed) 569 Candidatus_Paracaedibacter Candidatus Paracaedibacter symbiosus 17 Candidatus_Paracaedibacter Candidatus Paracaedibacter acanthamoebae # 23 reads uniquely mapped to Catellicoccus (multi-hits among diff. species in Catellicoccus allowed) 23 Catellicoccus Catellicoccus marimammalium M35/04/3 # 351 reads uniquely mapped to Corynebacterium (multi-hits among diff. species in Corynebacterium allowed) 114 Corynebacterium Corynebacterium pseudotuberculosis 79 Corynebacterium Corynebacterium simulans 65 Corynebacterium Corynebacterium accolens ATCC 49725 14 Corynebacterium Corynebacterium phocae 11 Corynebacterium Corynebacterium aurimucosum 8 Corynebacterium Corynebacterium variabile 5 Corynebacterium Corynebacterium doosanense CAU 212 = DSM 45436 5 Corynebacterium Corynebacterium matruchotii ATCC 14266 4 Corynebacterium Corynebacterium lactis RW2-5 4 Corynebacterium Corynebacterium pseudodiphtheriticum DSM 44287 3 Corynebacterium Corynebacterium sp. ATCC 6931 3 Corynebacterium Corynebacterium aurimucosum ATCC 700975 3 Corynebacterium Corynebacterium bovis DSM 20582 = CIP 54.80 2 Corynebacterium Corynebacterium falsenii DSM 44353 2 Corynebacterium Corynebacterium afermentans subsp. afermentans 2 Corynebacterium Corynebacterium glyciniphilum AJ 3170 2 Corynebacterium Corynebacterium aquilae DSM 44791 2 Corynebacterium Corynebacterium urealyticum DSM 7111 2 Corynebacterium Corynebacterium flavescens 1 Corynebacterium Corynebacterium urealyticum DSM 7109 1 Corynebacterium [Brevibacterium] flavum ZL-1 1 Corynebacterium Corynebacterium sp. NML98-0116 1 Corynebacterium Corynebacterium glutamicum SCgG1 1 Corynebacterium Corynebacterium diphtheriae INCA 402 1 Corynebacterium Corynebacterium massiliense DSM 45435 1 Corynebacterium Corynebacterium riegelii 1 Corynebacterium Corynebacterium durum F0235 1 Corynebacterium Corynebacterium imitans 1 Corynebacterium Corynebacterium ureicelerivorans 1 Corynebacterium Corynebacterium humireducens NBRC 106098 = DSM 45392 1 Corynebacterium Corynebacterium diphtheriae VA01 1 Corynebacterium Corynebacterium atypicum 1 Corynebacterium Corynebacterium amycolatum SK46 1 Corynebacterium Corynebacterium diphtheriae PW8 1 Corynebacterium Corynebacterium pseudotuberculosis 316 1 Corynebacterium Corynebacterium genitalium ATCC 33030 1 Corynebacterium Corynebacterium diphtheriae BH8 1 Corynebacterium Corynebacterium uterequi 1 Corynebacterium Corynebacterium jeddahense 1 Corynebacterium Corynebacterium testudinoris # 356 reads uniquely mapped to Cutibacterium (multi-hits among diff. species in Cutibacterium allowed) 91 Cutibacterium Cutibacterium acnes 68 Cutibacterium [Propionibacterium] namnetense SK182B-JCVI 23 Cutibacterium Propionibacterium acnes 6609 19 Cutibacterium Propionibacterium acnes hdn-1 18 Cutibacterium Propionibacterium acnes KPA171202 18 Cutibacterium Propionibacterium acnes TypeIA2 P.acn33 17 Cutibacterium Propionibacterium acnes SK137 15 Cutibacterium Propionibacterium acnes TypeIA2 P.acn31 15 Cutibacterium Propionibacterium acnes HL096PA1 15 Cutibacterium Propionibacterium acnes 266 14 Cutibacterium Propionibacterium acnes TypeIA2 P.acn17 12 Cutibacterium Propionibacterium acnes subsp. defendens ATCC 11828 11 Cutibacterium Cutibacterium granulosum DSM 20700 11 Cutibacterium Propionibacterium acnes C1 4 Cutibacterium Cutibacterium avidum 4 Cutibacterium Cutibacterium avidum 44067 1 Cutibacterium [Propionibacterium] humerusii P08 # 42 reads uniquely mapped to Cystobacter (multi-hits among diff. species in Cystobacter allowed) 42 Cystobacter Cystobacter fuscus DSM 2262 # 11 reads uniquely mapped to Cytophaga (multi-hits among diff. species in Cytophaga allowed) 6 Cytophaga Cytophaga hutchinsonii ATCC 33406 5 Cytophaga Cytophaga aurantiaca DSM 3654 # 23 reads uniquely mapped to Deinococcus (multi-hits among diff. species in Deinococcus allowed) 4 Deinococcus Deinococcus proteolyticus MRP 4 Deinococcus Deinococcus misasensis DSM 22328 3 Deinococcus Deinococcus sp. YIM 77859 2 Deinococcus Deinococcus frigens DSM 12807 2 Deinococcus Deinococcus puniceus 2 Deinococcus Deinococcus geothermalis DSM 11300 2 Deinococcus Deinococcus soli Cha et al. 2016 1 Deinococcus Deinococcus maricopensis DSM 21211 1 Deinococcus Deinococcus ficus DSM 19119 1 Deinococcus Deinococcus peraridilitoris DSM 19664 1 Deinococcus Deinococcus apachensis DSM 19763 # 62 reads uniquely mapped to Delftia (multi-hits among diff. species in Delftia allowed) 21 Delftia Delftia sp. HK171 16 Delftia Delftia acidovorans SPH-1 14 Delftia Delftia tsuruhatensis 11 Delftia Delftia sp. Cs1-4 # 17 reads uniquely mapped to Desulfurivibrio (multi-hits among diff. species in Desulfurivibrio allowed) 17 Desulfurivibrio Desulfurivibrio alkaliphilus AHT 2 # 60 reads uniquely mapped to Devosia (multi-hits among diff. species in Devosia allowed) 11 Devosia Devosia psychrophila 8 Devosia Devosia sp. LC5 8 Devosia Devosia sp. H5989 7 Devosia Devosia geojensis 6 Devosia Devosia soli 5 Devosia Devosia riboflavina 4 Devosia Devosia epidermidihirudinis 4 Devosia Devosia chinhatensis 4 Devosia Devosia sp. A16 1 Devosia Devosia sp. Root685 1 Devosia Devosia insulae DS-56 1 Devosia Devosia sp. Root436 # 22 reads uniquely mapped to Dialister (multi-hits among diff. species in Dialister allowed) 13 Dialister Dialister pneumosintes 7 Dialister Dialister succinatiphilus YIT 11850 2 Dialister Dialister micraerophilus DSM 19965 # 12 reads uniquely mapped to Dyadobacter (multi-hits among diff. species in Dyadobacter allowed) 6 Dyadobacter Dyadobacter fermentans DSM 18053 4 Dyadobacter Dyadobacter alkalitolerans DSM 23607 1 Dyadobacter Dyadobacter crusticola DSM 16708 1 Dyadobacter Dyadobacter tibetensis Y620-1 # 56 reads uniquely mapped to Erythrobacter (multi-hits among diff. species in Erythrobacter allowed) 9 Erythrobacter Erythrobacter sp. SG61-1L 9 Erythrobacter Erythrobacter litoralis 9 Erythrobacter Erythrobacter sp. JL475 7 Erythrobacter Erythrobacter gangjinensis 6 Erythrobacter Erythrobacter marinus 6 Erythrobacter Erythrobacter citreus LAMA 915 4 Erythrobacter Erythrobacter litoralis HTCC2594 3 Erythrobacter Erythrobacter atlanticus 2 Erythrobacter Erythrobacter longus 1 Erythrobacter Erythrobacter luteus # 748 reads uniquely mapped to Escherichia (multi-hits among diff. species in Escherichia allowed) 443 Escherichia Escherichia coli 63 Escherichia Escherichia coli K-12 25 Escherichia Escherichia coli O157:H7 21 Escherichia Escherichia coli B 17 Escherichia Escherichia coli str. K-12 substr. MG1655 10 Escherichia Escherichia coli 'BL21-Gold(DE3)pLysS AG' 8 Escherichia Escherichia coli KO11FL 6 Escherichia Escherichia coli DH1 6 Escherichia NZ_CP018770 5 Escherichia Escherichia coli LF82 5 Escherichia Escherichia coli HS 5 Escherichia Escherichia coli SMS-3-5 5 Escherichia Escherichia coli P12b 5 Escherichia Escherichia coli BL21(DE3) 5 Escherichia Escherichia coli O145:H28 str. RM12761 4 Escherichia Escherichia coli str. 'clone D i14' 4 Escherichia Escherichia coli O104:H4 str. 2009EL-2071 4 Escherichia Escherichia coli O139:H28 str. E24377A 4 Escherichia Escherichia coli O25b:H4-ST131 4 Escherichia Escherichia coli O104:H4 str. 2009EL-2050 4 Escherichia Escherichia coli str. 'clone D i2' 3 Escherichia Escherichia coli UMNK88 3 Escherichia Escherichia coli B str. REL606 3 Escherichia Escherichia coli O83:H1 str. NRG 857C 3 Escherichia Escherichia coli O145:H28 str. RM13516 3 Escherichia Escherichia coli O103:H2 str. 12009 3 Escherichia Escherichia coli ATCC 8739 3 Escherichia Escherichia coli O157 3 Escherichia Escherichia coli O157:H16 2 Escherichia Escherichia coli APEC O78 2 Escherichia Escherichia coli str. K-12 substr. MC4100 2 Escherichia Escherichia coli str. K-12 substr. W3110 2 Escherichia Escherichia coli PCN033 2 Escherichia Escherichia coli O55:H7 str. RM12579 2 Escherichia Escherichia coli str. K-12 substr. DH10B 2 Escherichia Escherichia coli O26:H11 str. 11368 2 Escherichia Escherichia coli KLY 2 Escherichia Escherichia coli ER2796 2 Escherichia Escherichia coli ATCC 25922 2 Escherichia Escherichia coli O157:H7 str. EC4115 2 Escherichia Escherichia coli SE11 2 Escherichia Escherichia coli ABU 83972 2 Escherichia Escherichia coli Nissle 1917 2 Escherichia NZ_CP014492 2 Escherichia Escherichia coli PCN061 2 Escherichia Escherichia coli O111:H- str. 11128 2 Escherichia Escherichia coli O104:H4 str. C227-11 2 Escherichia Escherichia coli IAI1 2 Escherichia Escherichia coli 536 2 Escherichia Escherichia coli O157:H7 str. TW14359 2 Escherichia Escherichia coli ETEC H10407 2 Escherichia Escherichia coli UMN026 2 Escherichia Escherichia coli 042 2 Escherichia Escherichia coli W 2 Escherichia Escherichia coli O104:H4 str. 2011C-3493 1 Escherichia Escherichia coli str. Sanji 1 Escherichia Escherichia coli CFT073 1 Escherichia Escherichia coli ACN001 1 Escherichia Escherichia coli BW2952 1 Escherichia NZ_CP014670 1 Escherichia Escherichia coli O157:H7 str. SS17 1 Escherichia Escherichia coli ECC-1470 1 Escherichia Escherichia coli 1303 1 Escherichia Escherichia coli IHE3034 1 Escherichia Escherichia coli O127:H6 str. E2348/69 1 Escherichia NZ_CP014197 1 Escherichia Escherichia coli O7:K1 str. CE10 1 Escherichia Escherichia albertii 1 Escherichia Escherichia coli O157:H7 str. Sakai 1 Escherichia Escherichia albertii KF1 1 Escherichia Escherichia coli JJ1886 1 Escherichia Escherichia coli JJ1887 1 Escherichia Escherichia coli VR50 1 Escherichia Escherichia coli O55:H7 str. CB9615 # 244 reads uniquely mapped to Exiguobacterium (multi-hits among diff. species in Exiguobacterium allowed) 209 Exiguobacterium Exiguobacterium profundum 12 Exiguobacterium Exiguobacterium sp. AT1b 4 Exiguobacterium Exiguobacterium aurantiacum DSM 6208 4 Exiguobacterium Exiguobacterium aurantiacum 3 Exiguobacterium Exiguobacterium sibiricum 255-15 3 Exiguobacterium Exiguobacterium sp. ZWU0009 3 Exiguobacterium Exiguobacterium antarcticum B7 3 Exiguobacterium Exiguobacterium sp. U13-1 2 Exiguobacterium Exiguobacterium sp. MH3 1 Exiguobacterium Exiguobacterium undae # 96 reads uniquely mapped to Finegoldia (multi-hits among diff. species in Finegoldia allowed) 96 Finegoldia Finegoldia magna ATCC 29328 # 197 reads uniquely mapped to Fusobacterium (multi-hits among diff. species in Fusobacterium allowed) 180 Fusobacterium Fusobacterium nucleatum 4 Fusobacterium Fusobacterium nucleatum subsp. animalis 7_1 3 Fusobacterium Fusobacterium nucleatum subsp. polymorphum 2 Fusobacterium Fusobacterium nucleatum subsp. nucleatum ATCC 25586 2 Fusobacterium Fusobacterium nucleatum subsp. vincentii 3_1_36A2 2 Fusobacterium Fusobacterium nucleatum subsp. vincentii 3_1_27 1 Fusobacterium Fusobacterium periodonticum 2_1_31 1 Fusobacterium Fusobacterium nucleatum subsp. nucleatum ChDC F316 1 Fusobacterium Fusobacterium hwasookii ChDC F206 1 Fusobacterium Fusobacterium hwasookii ChDC F300 # 33 reads uniquely mapped to Gemella (multi-hits among diff. species in Gemella allowed) 17 Gemella Gemella haemolysans ATCC 10379 10 Gemella Gemella sp. oral taxon 928 4 Gemella Gemella sanguinis ATCC 700632 2 Gemella Gemella bergeriae ATCC 700627 # 39 reads uniquely mapped to Gordonia (multi-hits among diff. species in Gordonia allowed) 7 Gordonia Gordonia shandongensis DSM 45094 5 Gordonia Gordonia sp. KTR9 4 Gordonia Gordonia sp. QH-11 4 Gordonia Gordonia terrae 3 Gordonia Gordonia araii NBRC 100433 3 Gordonia Gordonia hirsuta DSM 44140 = NBRC 16056 2 Gordonia Gordonia amicalis NBRC 100051 = JCM 11271 2 Gordonia Gordonia soli NBRC 108243 2 Gordonia Gordonia kroppenstedtii DSM 45133 2 Gordonia Gordonia polyisoprenivorans VH2 1 Gordonia Gordonia neofelifaecis NRRL B-59395 1 Gordonia Gordonia rhizosphera NBRC 16068 1 Gordonia Gordonia amarae NBRC 15530 1 Gordonia Gordonia paraffinivorans NBRC 108238 1 Gordonia Gordonia bronchialis DSM 43247 # 92 reads uniquely mapped to Herminiimonas (multi-hits among diff. species in Herminiimonas allowed) 74 Herminiimonas Herminiimonas arsenicoxydans 13 Herminiimonas Herminiimonas sp. CN 5 Herminiimonas Herminiimonas sp. AS8 # 2862 reads uniquely mapped to Hymenobacter (multi-hits among diff. species in Hymenobacter allowed) 2849 Hymenobacter Hymenobacter terrenus 4 Hymenobacter Hymenobacter sp. APR13 3 Hymenobacter Hymenobacter sp. PAMC 26554 3 Hymenobacter Hymenobacter sp. DG25A 1 Hymenobacter Hymenobacter sp. DG25B 1 Hymenobacter Hymenobacter sp. IS2118 1 Hymenobacter Hymenobacter sedentarius # 43 reads uniquely mapped to Kiloniella (multi-hits among diff. species in Kiloniella allowed) 42 Kiloniella Kiloniella spongiae 1 Kiloniella Kiloniella laminariae DSM 19542 # 135 reads uniquely mapped to Klebsiella (multi-hits among diff. species in Klebsiella allowed) 59 Klebsiella Klebsiella pneumoniae 14 Klebsiella NZ_CP017480 13 Klebsiella Klebsiella pneumoniae subsp. pneumoniae 8 Klebsiella Klebsiella oxytoca 6 Klebsiella Klebsiella sp. RIT-PI-d 4 Klebsiella Klebsiella variicola 3 Klebsiella Klebsiella pneumoniae subsp. pneumoniae KPNIH24 3 Klebsiella Klebsiella pneumoniae subsp. pneumoniae MGH 78578 3 Klebsiella Klebsiella michiganensis 2 Klebsiella Klebsiella aerogenes KCTC 2190 2 Klebsiella Klebsiella aerogenes 2 Klebsiella Klebsiella pneumoniae subsp. pneumoniae PittNDM01 2 Klebsiella Klebsiella pneumoniae subsp. pneumoniae KPNIH27 2 Klebsiella Klebsiella michiganensis E718 1 Klebsiella Klebsiella pneumoniae subsp. pneumoniae KPNIH1 1 Klebsiella Klebsiella pneumoniae JM45 1 Klebsiella Klebsiella pneumoniae subsp. pneumoniae Kp13 1 Klebsiella Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 1 Klebsiella Klebsiella pneumoniae UHKPC33 1 Klebsiella Klebsiella pneumoniae subsp. pneumoniae HS11286 1 Klebsiella Klebsiella aerogenes EA1509E 1 Klebsiella Klebsiella michiganensis HKOPL1 1 Klebsiella Klebsiella pneumoniae subsp. pneumoniae 1158 1 Klebsiella Klebsiella pneumoniae DMC1097 1 Klebsiella Klebsiella pneumoniae HK787 1 Klebsiella Klebsiella pneumoniae 500_1420 # 37 reads uniquely mapped to Kocuria (multi-hits among diff. species in Kocuria allowed) 10 Kocuria Kocuria palustris 6 Kocuria Kocuria turfanensis 5 Kocuria Kocuria polaris 5 Kocuria Kocuria kristinae 4 Kocuria Kocuria rhizophila DC2201 2 Kocuria Kocuria salsicia 2 Kocuria Kocuria flava 2 Kocuria Kocuria sp. ZOR0020 1 Kocuria Kocuria marina # 83 reads uniquely mapped to Lactobacillus (multi-hits among diff. species in Lactobacillus allowed) 13 Lactobacillus Lactobacillus selangorensis 5 Lactobacillus Lactobacillus ginsenosidimutans 5 Lactobacillus Lactobacillus floricola DSM 23037 = JCM 16512 4 Lactobacillus Lactobacillus vaginalis DSM 5837 = ATCC 49540 3 Lactobacillus Lactobacillus rennini DSM 20253 3 Lactobacillus Lactobacillus sakei subsp. sakei 23K 3 Lactobacillus Lactobacillus curvatus 2 Lactobacillus Lactobacillus delbrueckii subsp. bulgaricus 2 Lactobacillus Lactobacillus backii 2 Lactobacillus Lactobacillus plantarum 2 Lactobacillus Lactobacillus johnsonii N6.2 2 Lactobacillus Lactobacillus acidipiscis 2 Lactobacillus Lactobacillus apis 2 Lactobacillus Lactobacillus composti DSM 18527 = JCM 14202 2 Lactobacillus Lactobacillus crispatus ST1 1 Lactobacillus Lactobacillus helveticus R0052 1 Lactobacillus Lactobacillus fermentum 1 Lactobacillus Lactobacillus acidophilus La-14 1 Lactobacillus Lactobacillus versmoldensis DSM 14857 = KCTC 3814 1 Lactobacillus Lactobacillus helveticus 1 Lactobacillus Lactobacillus senioris DSM 24302 = JCM 17472 1 Lactobacillus Lactobacillus alimentarius DSM 20249 1 Lactobacillus Lactobacillus gasseri ATCC 33323 = JCM 1131 1 Lactobacillus Lactobacillus acetotolerans 1 Lactobacillus Lactobacillus nagelii DSM 13675 1 Lactobacillus Lactobacillus sp. wkB8 1 Lactobacillus Lactobacillus rossiae DSM 15814 1 Lactobacillus Lactobacillus mellis 1 Lactobacillus Lactobacillus amylophilus DSM 20533 = JCM 1125 1 Lactobacillus Lactobacillus aviarius subsp. aviarius DSM 20655 1 Lactobacillus Lactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 1 Lactobacillus Lactobacillus acidifarinae DSM 19394 1 Lactobacillus Lactobacillus amylovorus 1 Lactobacillus Lactobacillus johnsonii FI9785 1 Lactobacillus Lactobacillus kefiranofaciens ZW3 1 Lactobacillus Lactobacillus nasuensis JCM 17158 1 Lactobacillus Lactobacillus sharpeae JCM 1186 = DSM 20505 1 Lactobacillus Lactobacillus delbrueckii subsp. lactis 1 Lactobacillus Lactobacillus rhamnosus GG 1 Lactobacillus Lactobacillus malefermentans DSM 5705 = KCTC 3548 1 Lactobacillus Lactobacillus delbrueckii subsp. bulgaricus 2038 1 Lactobacillus Lactobacillus iners DSM 13335 1 Lactobacillus Lactobacillus kunkeei 1 Lactobacillus Lactobacillus pontis DSM 8475 1 Lactobacillus Lactobacillus capillatus DSM 19910 1 Lactobacillus Lactobacillus graminis DSM 20719 # 23 reads uniquely mapped to Lactococcus (multi-hits among diff. species in Lactococcus allowed) 9 Lactococcus Lactococcus piscium MKFS47 3 Lactococcus Lactococcus garvieae ATCC 49156 2 Lactococcus Lactococcus lactis subsp. lactis CV56 2 Lactococcus Lactococcus lactis subsp. lactis IO-1 2 Lactococcus Lactococcus lactis subsp. cremoris MG1363 2 Lactococcus Lactococcus lactis subsp. lactis 1 Lactococcus Lactococcus lactis subsp. cremoris UC509.9 1 Lactococcus Lactococcus lactis 1 Lactococcus Lactococcus lactis subsp. lactis KLDS 4.0325 # 31 reads uniquely mapped to Lawsonella (multi-hits among diff. species in Lawsonella allowed) 31 Lawsonella Lawsonella clevelandensis # 16 reads uniquely mapped to Leptospirillum (multi-hits among diff. species in Leptospirillum allowed) 7 Leptospirillum Leptospirillum ferriphilum YSK 5 Leptospirillum Leptospirillum ferriphilum ML-04 3 Leptospirillum Leptospirillum sp. Group II 'CF-1' 1 Leptospirillum Leptospirillum ferrooxidans C2-3 # 40 reads uniquely mapped to Leuconostoc (multi-hits among diff. species in Leuconostoc allowed) 14 Leuconostoc Leuconostoc carnosum JB16 4 Leuconostoc Leuconostoc garlicum 3 Leuconostoc Leuconostoc mesenteroides subsp. suionicum 3 Leuconostoc Leuconostoc citreum KM20 2 Leuconostoc Leuconostoc mesenteroides subsp. mesenteroides J18 2 Leuconostoc Leuconostoc mesenteroides subsp. mesenteroides 2 Leuconostoc Leuconostoc fallax KCTC 3537 1 Leuconostoc Leuconostoc gelidum JB7 1 Leuconostoc Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 Leuconostoc Leuconostoc gelidum subsp. gasicomitatum KG16-1 1 Leuconostoc Leuconostoc mesenteroides KFRI-MG 1 Leuconostoc Leuconostoc gelidum subsp. gasicomitatum LMG 18811 1 Leuconostoc Leuconostoc sp. C2 1 Leuconostoc Leuconostoc kimchii IMSNU 11154 1 Leuconostoc Leuconostoc mesenteroides 1 Leuconostoc Leuconostoc pseudomesenteroides PS12 1 Leuconostoc Leuconostoc mesenteroides subsp. dextranicum # 43 reads uniquely mapped to Loktanella (multi-hits among diff. species in Loktanella allowed) 13 Loktanella Loktanella vestfoldensis DSM 16212 12 Loktanella Loktanella sp. 3ANDIMAR09 6 Loktanella Loktanella cinnabarina LL-001 5 Loktanella Loktanella hongkongensis DSM 17492 5 Loktanella Loktanella sp. S4079 2 Loktanella Loktanella sp. 1ANDIMAR09 # 69 reads uniquely mapped to Marinimicrobium (multi-hits among diff. species in Marinimicrobium allowed) 39 Marinimicrobium Marinimicrobium sp. LS-A18 30 Marinimicrobium Marinimicrobium agarilyticum DSM 16975 # 53 reads uniquely mapped to Methylobacterium (multi-hits among diff. species in Methylobacterium allowed) 13 Methylobacterium Methylobacterium aquaticum 9 Methylobacterium Methylobacterium sp. ZNC0032 7 Methylobacterium Methylobacterium nodulans ORS 2060 6 Methylobacterium Methylobacterium sp. 77 4 Methylobacterium Methylobacterium radiotolerans JCM 2831 3 Methylobacterium Methylobacterium extorquens 3 Methylobacterium Methylobacterium sp. Leaf456 2 Methylobacterium Methylobacterium sp. ARG-1 1 Methylobacterium Methylobacterium sp. Leaf89 1 Methylobacterium Methylobacterium populi 1 Methylobacterium Methylobacterium sp. AMS5 1 Methylobacterium Methylobacterium sp. 4-46 1 Methylobacterium Methylobacterium populi BJ001 1 Methylobacterium Methylobacterium sp. C1 # 45 reads uniquely mapped to Microbacterium (multi-hits among diff. species in Microbacterium allowed) 7 Microbacterium Microbacterium gorillae 6 Microbacterium Microbacterium sp. Root61 3 Microbacterium Microbacterium paludicola 3 Microbacterium Microbacterium gubbeenense DSM 15944 3 Microbacterium Microbacterium sp. CH12i 2 Microbacterium Microbacterium indicum DSM 19969 2 Microbacterium Microbacterium sp. CF335 2 Microbacterium Microbacterium sp. Root180 2 Microbacterium Microbacterium sp. No. 7 2 Microbacterium Microbacterium chocolatum 2 Microbacterium Microbacterium luticocti DSM 19459 1 Microbacterium Microbacterium ketosireducens 1 Microbacterium Microbacterium oleivorans NBRC 103075 1 Microbacterium Microbacterium aurum 1 Microbacterium Microbacterium mangrovi 1 Microbacterium Microbacterium sp. 1.5R 1 Microbacterium Microbacterium sp. BH-3-3-3 1 Microbacterium Microbacterium trichothecenolyticum 1 Microbacterium Microbacterium sp. UNCCL10 1 Microbacterium Microbacterium sp. C448 1 Microbacterium Microbacterium sp. PAMC 28756 1 Microbacterium Microbacterium profundi # 34 reads uniquely mapped to Micrococcus (multi-hits among diff. species in Micrococcus allowed) 34 Micrococcus Micrococcus luteus NCTC 2665 # 208 reads uniquely mapped to Mobilicoccus (multi-hits among diff. species in Mobilicoccus allowed) 188 Mobilicoccus Mobilicoccus pelagius NBRC 104925 20 Mobilicoccus Mobilicoccus sp. SIT2 # 73 reads uniquely mapped to Moraxella (multi-hits among diff. species in Moraxella allowed) 18 Moraxella Moraxella catarrhalis 17 Moraxella Moraxella bovoculi 12 Moraxella Moraxella osloensis 10 Moraxella Moraxella catarrhalis BBH18 6 Moraxella Moraxella ovis 6 Moraxella Moraxella macacae 0408225 2 Moraxella Moraxella caprae DSM 19149 2 Moraxella Moraxella boevrei DSM 14165 # 1575 reads uniquely mapped to Mycobacterium (multi-hits among diff. species in Mycobacterium allowed) 1537 Mycobacterium Mycobacterium sp. Root265 4 Mycobacterium Mycobacterium abscessus subsp. bolletii 3 Mycobacterium Mycobacterium smegmatis 2 Mycobacterium Mycobacterium mageritense DSM 44476 = CIP 104973 2 Mycobacterium NZ_CP020381 2 Mycobacterium Mycobacterium chlorophenolicum 2 Mycobacterium Mycobacterium bovis BCG str. Tokyo 172 2 Mycobacterium Mycobacterium tuberculosis 2 Mycobacterium Mycobacterium liflandii 128FXT 2 Mycobacterium Mycobacterium immunogenum 1 Mycobacterium Mycobacterium rhodesiae NBB3 1 Mycobacterium Mycobacterium aurum 1 Mycobacterium Mycobacterium elephantis 1 Mycobacterium Mycobacterium sp. KMS 1 Mycobacterium Mycobacterium smegmatis str. MC2 155 1 Mycobacterium Mycobacterium thermoresistibile ATCC 19527 1 Mycobacterium Mycobacterium sp. djl-10 1 Mycobacterium Mycobacterium abscessus subsp. abscessus 1 Mycobacterium Mycobacterium heraklionense 1 Mycobacterium Mycobacterium sp. GA-1331 1 Mycobacterium Mycobacterium simiae 1 Mycobacterium Mycobacterium vanbaalenii PYR-1 1 Mycobacterium Mycobacterium neoaurum VKM Ac-1815D 1 Mycobacterium Mycobacterium gilvum Spyr1 1 Mycobacterium Mycobacterium tuberculosis F11 1 Mycobacterium Mycobacterium chubuense NBB4 1 Mycobacterium Mycobacterium kyorinense # 18 reads uniquely mapped to Nesiotobacter (multi-hits among diff. species in Nesiotobacter allowed) 18 Nesiotobacter Nesiotobacter exalbescens DSM 16456 # 44 reads uniquely mapped to Nevskia (multi-hits among diff. species in Nevskia allowed) 26 Nevskia Nevskia ramosa DSM 11499 18 Nevskia Nevskia soli DSM 19509 # 362 reads uniquely mapped to Nocardia (multi-hits among diff. species in Nocardia allowed) 325 Nocardia Nocardia paucivorans NBRC 100373 7 Nocardia Nocardia sp. 348MFTsu5.1 6 Nocardia Nocardia farcinica 6 Nocardia Nocardia rhamnosiphila NBRC 108938 4 Nocardia Nocardia sp. BMG51109 3 Nocardia Nocardia takedensis NBRC 100417 3 Nocardia Nocardia seriolae 2 Nocardia Nocardia soli 1 Nocardia Nocardia pneumoniae NBRC 100136 1 Nocardia Nocardia asteroides NBRC 15531 1 Nocardia Nocardia otitidiscaviarum NBRC 14405 1 Nocardia Nocardia veterana NBRC 100344 1 Nocardia Nocardia vinacea NBRC 16497 1 Nocardia Nocardia nova SH22a # 300 reads uniquely mapped to Nocardioides (multi-hits among diff. species in Nocardioides allowed) 263 Nocardioides Nocardioides sp. Soil797 7 Nocardioides Nocardioides sp. Soil805 4 Nocardioides Nocardioides dokdonensis FR1436 4 Nocardioides Nocardioides luteus 3 Nocardioides Nocardioides sp. Root151 3 Nocardioides Nocardioides sp. Root682 3 Nocardioides Nocardioides sp. URHA0020 2 Nocardioides Nocardioides alkalitolerans DSM 16699 2 Nocardioides Nocardioides sp. URHA0032 2 Nocardioides Nocardioides sp. CF8 1 Nocardioides Nocardioides sp. Soil774 1 Nocardioides Nocardioides insulae DSM 17944 1 Nocardioides Nocardioides sp. Iso805N 1 Nocardioides Nocardioides sp. JS614 1 Nocardioides Nocardioides sp. Root79 1 Nocardioides Nocardioides sp. J54 1 Nocardioides Nocardioides halotolerans DSM 19273 # 459 reads uniquely mapped to Novosphingobium (multi-hits among diff. species in Novosphingobium allowed) 381 Novosphingobium Novosphingobium malaysiense 25 Novosphingobium Novosphingobium sp. Leaf2 12 Novosphingobium Novosphingobium lindaniclasticum LE124 6 Novosphingobium Novosphingobium sp. AAP83 5 Novosphingobium Novosphingobium pentaromativorans US6-1 5 Novosphingobium Novosphingobium barchaimii LL02 4 Novosphingobium Novosphingobium acidiphilum DSM 19966 4 Novosphingobium Novosphingobium aromaticivorans DSM 12444 3 Novosphingobium Novosphingobium sp. MBES04 3 Novosphingobium Novosphingobium nitrogenifigens DSM 19370 2 Novosphingobium Novosphingobium sp. AAP93 2 Novosphingobium Novosphingobium sp. PP1Y 2 Novosphingobium Novosphingobium subterraneum 2 Novosphingobium Novosphingobium barchaimii 1 Novosphingobium Novosphingobium resinovorum 1 Novosphingobium Novosphingobium tardaugens NBRC 16725 1 Novosphingobium Novosphingobium capsulatum NBRC 12533 # 101 reads uniquely mapped to Paraburkholderia (multi-hits among diff. species in Paraburkholderia allowed) 17 Paraburkholderia Paraburkholderia xenovorans LB400 16 Paraburkholderia Paraburkholderia sacchari 13 Paraburkholderia Paraburkholderia fungorum 9 Paraburkholderia Paraburkholderia sprentiae WSM5005 8 Paraburkholderia Paraburkholderia andropogonis 7 Paraburkholderia Paraburkholderia caribensis MBA4 6 Paraburkholderia Paraburkholderia phenoliruptrix BR3459a 6 Paraburkholderia Paraburkholderia phymatum STM815 5 Paraburkholderia Paraburkholderia phytofirmans PsJN 4 Paraburkholderia Paraburkholderia caribensis 4 Paraburkholderia Paraburkholderia sp. SOS3 3 Paraburkholderia Paraburkholderia acidipaludis NBRC 101816 2 Paraburkholderia Paraburkholderia rhizoxinica HKI 454 1 Paraburkholderia Paraburkholderia kururiensis subsp. thiooxydans NBRC 107107 # 47 reads uniquely mapped to Paracoccus (multi-hits among diff. species in Paracoccus allowed) 20 Paracoccus Paracoccus sp. 228 5 Paracoccus Paracoccus sphaerophysae 4 Paracoccus Paracoccus sp. TRP 4 Paracoccus Paracoccus aminophilus JCM 7686 3 Paracoccus Paracoccus aminovorans 3 Paracoccus Paracoccus yeei ATCC BAA-599 2 Paracoccus Paracoccus halophilus 2 Paracoccus Paracoccus denitrificans PD1222 2 Paracoccus Paracoccus versutus 2 Paracoccus Paracoccus sp. J55 # 29 reads uniquely mapped to Patulibacter (multi-hits among diff. species in Patulibacter allowed) 14 Patulibacter Patulibacter minatonensis DSM 18081 11 Patulibacter Patulibacter medicamentivorans 4 Patulibacter Patulibacter americanus DSM 16676 # 9 reads uniquely mapped to Pedobacter (multi-hits among diff. species in Pedobacter allowed) 3 Pedobacter Pedobacter cryoconitis 2 Pedobacter Pedobacter sp. PACM 27299 1 Pedobacter Pedobacter oryzae DSM 19973 1 Pedobacter Pedobacter sp. Hv1 1 Pedobacter Pedobacter steynii 1 Pedobacter Pedobacter heparinus DSM 2366 # 93 reads uniquely mapped to Peptoniphilus (multi-hits among diff. species in Peptoniphilus allowed) 33 Peptoniphilus Peptoniphilus rhinitidis 1-13 14 Peptoniphilus Peptoniphilus harei ACS-146-V-Sch2b 9 Peptoniphilus Peptoniphilus senegalensis JC140 7 Peptoniphilus Peptoniphilus timonensis JC401 6 Peptoniphilus Peptoniphilus grossensis ph5 5 Peptoniphilus Peptoniphilus lacrimalis DSM 7455 5 Peptoniphilus Peptoniphilus sp. ChDC B134 4 Peptoniphilus Peptoniphilus sp. ING2-D1G 4 Peptoniphilus Peptoniphilus sp. BV3C26 2 Peptoniphilus Peptoniphilus obesi ph1 2 Peptoniphilus Peptoniphilus duerdenii ATCC BAA-1640 1 Peptoniphilus Peptoniphilus indolicus ATCC 29427 1 Peptoniphilus Peptoniphilus sp. oral taxon 375 str. F0436 # 26 reads uniquely mapped to Peptostreptococcus (multi-hits among diff. species in Peptostreptococcus allowed) 19 Peptostreptococcus Peptostreptococcus stomatis DSM 17678 7 Peptostreptococcus Peptostreptococcus anaerobius VPI 4330 = DSM 2949 # 32 reads uniquely mapped to Phenylobacterium (multi-hits among diff. species in Phenylobacterium allowed) 15 Phenylobacterium Phenylobacterium sp. Root700 9 Phenylobacterium Phenylobacterium zucineum HLK1 8 Phenylobacterium Phenylobacterium sp. Root1290 # 246 reads uniquely mapped to Phycicoccus (multi-hits among diff. species in Phycicoccus allowed) 216 Phycicoccus Phycicoccus sp. Soil803 13 Phycicoccus Phycicoccus jejuensis 11 Phycicoccus Phycicoccus sp. Soil748 6 Phycicoccus Phycicoccus sp. Root563 # 36 reads uniquely mapped to Phyllobacterium (multi-hits among diff. species in Phyllobacterium allowed) 23 Phyllobacterium Phyllobacterium sp. UNC302MFCol5.2 13 Phyllobacterium Phyllobacterium sp. YR531 # 33 reads uniquely mapped to Planococcus (multi-hits among diff. species in Planococcus allowed) 22 Planococcus Planococcus kocurii 3 Planococcus Planococcus maritimus 2 Planococcus Planococcus donghaensis 2 Planococcus Planococcus rifietoensis 1 Planococcus Planococcus faecalis 1 Planococcus Planococcus plakortidis 1 Planococcus Planococcus sp. L10.15 1 Planococcus Planococcus antarcticus DSM 14505 # 50 reads uniquely mapped to Porphyrobacter (multi-hits among diff. species in Porphyrobacter allowed) 20 Porphyrobacter Porphyrobacter mercurialis 13 Porphyrobacter Porphyrobacter sp. HL-46 10 Porphyrobacter Porphyrobacter cryptus DSM 12079 3 Porphyrobacter Porphyrobacter sp. LM 6 2 Porphyrobacter Porphyrobacter sp. AAP82 2 Porphyrobacter Porphyrobacter sp. AAP60 # 70 reads uniquely mapped to Prevotella (multi-hits among diff. species in Prevotella allowed) 23 Prevotella Prevotella bivia DSM 20514 23 Prevotella Prevotella sp. S7 MS 2 4 Prevotella Prevotella sp. 10(H) 3 Prevotella Prevotella denticola F0289 3 Prevotella Prevotella disiens JCM 6334 = ATCC 29426 3 Prevotella Prevotella multisaccharivorax DSM 17128 2 Prevotella Prevotella enoeca 1 Prevotella Prevotella sp. oral taxon 299 str. F0039 1 Prevotella Prevotella fusca JCM 17724 1 Prevotella Prevotella bergensis DSM 17361 1 Prevotella Prevotella oryzae DSM 17970 1 Prevotella Prevotella stercorea DSM 18206 1 Prevotella Prevotella oris DSM 18711 = JCM 12252 1 Prevotella Prevotella bryantii B14 1 Prevotella Prevotella amnii DSM 23384 = JCM 14753 1 Prevotella Prevotella aurantiaca JCM 15754 # 10 reads uniquely mapped to Prochlorothrix (multi-hits among diff. species in Prochlorothrix allowed) 10 Prochlorothrix Prochlorothrix hollandica PCC 9006 = CALU 1027 # 27 reads uniquely mapped to Propionimicrobium (multi-hits among diff. species in Propionimicrobium allowed) 18 Propionimicrobium Propionimicrobium sp. Marseille-P3275 9 Propionimicrobium Propionimicrobium lymphophilum DSM 4903 # 155 reads uniquely mapped to Pseudomonas (multi-hits among diff. species in Pseudomonas allowed) 15 Pseudomonas Pseudomonas aeruginosa NCGM2.S1 11 Pseudomonas Pseudomonas resinovorans NBRC 106553 9 Pseudomonas Pseudomonas aeruginosa 8 Pseudomonas Pseudomonas oryzihabitans 8 Pseudomonas Pseudomonas aeruginosa VRFPA04 6 Pseudomonas Pseudomonas putida 5 Pseudomonas Pseudomonas balearica DSM 6083 4 Pseudomonas Pseudomonas fluorescens 3 Pseudomonas Pseudomonas stutzeri 3 Pseudomonas Pseudomonas psychrotolerans 2 Pseudomonas Pseudomonas sp. LPH1 2 Pseudomonas Pseudomonas parafulva 2 Pseudomonas Pseudomonas saudimassiliensis 2 Pseudomonas Pseudomonas putida KT2440 2 Pseudomonas Pseudomonas koreensis 2 Pseudomonas Pseudomonas alkylphenolica 2 Pseudomonas Pseudomonas pelagia CL-AP6 2 Pseudomonas Pseudomonas fluorescens F113 2 Pseudomonas Pseudomonas massiliensis 2 Pseudomonas Pseudomonas antarctica 2 Pseudomonas Pseudomonas putida S12 2 Pseudomonas Pseudomonas luteola XLDN4-9 2 Pseudomonas Pseudomonas sp. JY-Q 2 Pseudomonas Pseudomonas fluorescens PICF7 1 Pseudomonas Pseudomonas sp. CC6-YY-74 1 Pseudomonas Pseudomonas monteilii 1 Pseudomonas Pseudomonas mendocina ymp 1 Pseudomonas Pseudomonas aeruginosa DHS01 1 Pseudomonas Pseudomonas mosselii SJ10 1 Pseudomonas NZ_CP008865 1 Pseudomonas Pseudomonas mandelii JR-1 1 Pseudomonas Pseudomonas sp. GR 6-02 1 Pseudomonas Pseudomonas frederiksbergensis 1 Pseudomonas Pseudomonas sp. UW4 1 Pseudomonas Pseudomonas putida B6-2 1 Pseudomonas Pseudomonas putida S13.1.2 1 Pseudomonas Pseudomonas sp. URMO17WK12:I11 1 Pseudomonas Pseudomonas cerasi 1 Pseudomonas Pseudomonas flexibilis 1 Pseudomonas Pseudomonas sp. TTU2014-080ASC 1 Pseudomonas Pseudomonas putida GB-1 1 Pseudomonas Pseudomonas syringae pv. actinidiae 1 Pseudomonas Pseudomonas putida NBRC 14164 1 Pseudomonas NZ_CP008871 1 Pseudomonas Pseudomonas stutzeri DSM 10701 1 Pseudomonas Pseudomonas azotoformans 1 Pseudomonas Pseudomonas versuta 1 Pseudomonas Pseudomonas sp. CCOS 191 1 Pseudomonas Pseudomonas sp. ATCC 13867 1 Pseudomonas Pseudomonas azotifigens DSM 17556 1 Pseudomonas Pseudomonas pseudoalcaligenes 1 Pseudomonas Pseudomonas putida SJTE-1 1 Pseudomonas Pseudomonas knackmussii B13 1 Pseudomonas Pseudomonas putida H8234 1 Pseudomonas Pseudomonas brassicacearum subsp. brassicacearum NFM421 1 Pseudomonas Pseudomonas alcaliphila JAB1 1 Pseudomonas Pseudomonas sp. TCU-HL1 1 Pseudomonas Pseudomonas otitidis 1 Pseudomonas Pseudomonas aeruginosa LESB58 1 Pseudomonas Pseudomonas syringae CC1557 1 Pseudomonas Pseudomonas sp. S-6-2 1 Pseudomonas Pseudomonas thermotolerans DSM 14292 1 Pseudomonas Pseudomonas amygdali pv. lachrymans 1 Pseudomonas NZ_CP008860 1 Pseudomonas Pseudomonas aeruginosa MTB-1 1 Pseudomonas Pseudomonas fluorescens A506 1 Pseudomonas Pseudomonas putida W619 1 Pseudomonas Pseudomonas aeruginosa B136-33 1 Pseudomonas Pseudomonas sp. MS586 1 Pseudomonas Pseudomonas fluorescens Pf0-1 1 Pseudomonas Pseudomonas chlororaphis 1 Pseudomonas Pseudomonas trivialis 1 Pseudomonas Pseudomonas cichorii JBC1 1 Pseudomonas Pseudomonas sp. VLB120 1 Pseudomonas Pseudomonas putida JB 1 Pseudomonas Pseudomonas lutea 1 Pseudomonas Pseudomonas sp. StFLB209 1 Pseudomonas Pseudomonas syringae pv. actinidiae ICMP 9853 1 Pseudomonas Pseudomonas syringae pv. syringae B301D # 54 reads uniquely mapped to Roseomonas (multi-hits among diff. species in Roseomonas allowed) 33 Roseomonas Roseomonas gilardii 15 Roseomonas Roseomonas cervicalis ATCC 49957 6 Roseomonas Roseomonas aerilata DSM 19363 # 37 reads uniquely mapped to Rothia (multi-hits among diff. species in Rothia allowed) 18 Rothia Rothia dentocariosa ATCC 17931 7 Rothia Rothia mucilaginosa 7 Rothia Rothia mucilaginosa DY-18 5 Rothia Rothia dentocariosa # 41 reads uniquely mapped to Rubrobacter (multi-hits among diff. species in Rubrobacter allowed) 23 Rubrobacter Rubrobacter aplysinae 11 Rubrobacter Rubrobacter radiotolerans 7 Rubrobacter Rubrobacter xylanophilus DSM 9941 # 41 reads uniquely mapped to Ruegeria (multi-hits among diff. species in Ruegeria allowed) 9 Ruegeria Ruegeria mobilis F1926 7 Ruegeria Ruegeria sp. TM1040 7 Ruegeria Ruegeria halocynthiae 7 Ruegeria Silicibacter lacuscaerulensis ITI-1157 6 Ruegeria Ruegeria conchae 5 Ruegeria Ruegeria pomeroyi DSS-3 # 159 reads uniquely mapped to Salmonella (multi-hits among diff. species in Salmonella allowed) 17 Salmonella Salmonella enterica subsp. enterica 16 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium 15 Salmonella Salmonella enterica subsp. enterica serovar Heidelberg 15 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921 6 Salmonella Salmonella enterica subsp. enterica serovar Weltevreden str. 1655 4 Salmonella Salmonella enterica subsp. enterica serovar Anatum 3 Salmonella Salmonella enterica subsp. arizonae serovar 62:z36:- str. RKS2983 3 Salmonella Salmonella enterica subsp. enterica serovar Typhi str. CT18 3 Salmonella Salmonella enterica 3 Salmonella Salmonella enterica subsp. enterica serovar Saintpaul 3 Salmonella Salmonella enterica subsp. enterica serovar Albany str. ATCC 51960 2 Salmonella Salmonella enterica subsp. enterica serovar Wandsworth str. SA20092095 2 Salmonella Salmonella enterica subsp. enterica serovar Stanleyville str. CFSAN000624 2 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis 2 Salmonella Salmonella enterica subsp. enterica serovar Weltevreden 2 Salmonella Salmonella enterica subsp. enterica serovar Muenster str. 0315 2 Salmonella Salmonella enterica subsp. enterica serovar Typhi str. Ty2 2 Salmonella Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 2 Salmonella Salmonella enterica subsp. enterica serovar Antsalova str. S01-0511 2 Salmonella Salmonella enterica subsp. enterica serovar Newport 2 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium str. U288 2 Salmonella Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 2 Salmonella Salmonella enterica subsp. enterica serovar Infantis 1 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 1 Salmonella Salmonella enterica subsp. enterica serovar Borreze str. SA20041063 1 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110356 1 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120002 1 Salmonella Salmonella enterica subsp. enterica serovar Sloterdijk str. ATCC 15791 1 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 1 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium str. L-3553 1 Salmonella Salmonella enterica subsp. enterica serovar Paratyphi A 1 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110360 1 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis str. EC20121178 1 Salmonella Salmonella enterica subsp. enterica serovar Newport str. CVM 22425 1 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 1 Salmonella Salmonella enterica subsp. diarizonae 1 Salmonella Salmonella enterica subsp. enterica serovar Bardo 1 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis str. EC20121177 1 Salmonella Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1736 1 Salmonella Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 1 Salmonella Salmonella enterica subsp. enterica serovar Thompson 1 Salmonella Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 1 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis str. EC20100101 1 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis str. SA19970510 1 Salmonella Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 1 Salmonella Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1765 1 Salmonella Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 1 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis str. SA20094352 1 Salmonella Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 1 Salmonella Salmonella enterica subsp. enterica serovar Chester str. ATCC 11997 1 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110355 1 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis str. SA19960848 1 Salmonella Salmonella enterica subsp. enterica serovar Typhi 1 Salmonella Salmonella enterica subsp. enterica serovar Newport str. Levine 1 1 Salmonella Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927 1 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110357 1 Salmonella Salmonella enterica subsp. enterica serovar Thompson str. RM6836 1 Salmonella Salmonella enterica subsp. enterica serovar Crossness str. 1422-74 1 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis str. EC20121179 1 Salmonella Salmonella enterica subsp. enterica serovar Cubana str. CFSAN002050 1 Salmonella Salmonella bongori serovar 48:z41:-- str. RKS3044 1 Salmonella Salmonella enterica subsp. enterica serovar Newport str. CDC 2010K-2159 1 Salmonella Salmonella enterica subsp. enterica serovar Tennessee 1 Salmonella Salmonella enterica subsp. enterica serovar Apapa str. SA20060561 1 Salmonella Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110361 1 Salmonella NZ_CP007540 1 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1898 1 Salmonella Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1 1 Salmonella Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-2059 1 Salmonella Salmonella enterica subsp. enterica serovar Bergen str. ST350 # 20 reads uniquely mapped to Selenomonas (multi-hits among diff. species in Selenomonas allowed) 7 Selenomonas Selenomonas sputigena ATCC 35185 4 Selenomonas Selenomonas ruminantium AB3002 4 Selenomonas Selenomonas ruminantium subsp. lactilytica TAM6421 3 Selenomonas Selenomonas sp. oral taxon 478 2 Selenomonas Selenomonas sp. oral taxon 136 # 222 reads uniquely mapped to Serratia (multi-hits among diff. species in Serratia allowed) 99 Serratia Serratia sp. DD3 26 Serratia Serratia marcescens 25 Serratia Serratia sp. ATCC 39006 15 Serratia Serratia fonticola 6 Serratia Serratia odorifera DSM 4582 6 Serratia Serratia marcescens SM39 4 Serratia Serratia plymuthica AS9 4 Serratia Serratia rubidaea 4 Serratia Serratia marcescens SMB2099 4 Serratia Serratia marcescens subsp. marcescens Db11 4 Serratia Serratia plymuthica PRI-2C 3 Serratia Serratia sp. SCBI 3 Serratia Serratia plymuthica 3 Serratia Serratia marcescens WW4 3 Serratia Serratia sp. AS13 2 Serratia Serratia proteamaculans 568 2 Serratia Serratia liquefaciens ATCC 27592 2 Serratia Serratia sp. YD25 2 Serratia Serratia symbiotica SCt-VLC 2 Serratia Serratia plymuthica S13 1 Serratia Serratia sp. FS14 1 Serratia Serratia liquefaciens 1 Serratia Serratia marcescens FGI94 # 79 reads uniquely mapped to Skermanella (multi-hits among diff. species in Skermanella allowed) 61 Skermanella Skermanella stibiiresistens SB22 18 Skermanella Skermanella aerolata KACC 11604 # 88 reads uniquely mapped to Staphylococcus (multi-hits among diff. species in Staphylococcus allowed) 24 Staphylococcus Staphylococcus aureus 11 Staphylococcus Staphylococcus aureus subsp. aureus 4 Staphylococcus Staphylococcus aureus subsp. aureus ST772-MRSA-V 3 Staphylococcus Staphylococcus epidermidis PM221 3 Staphylococcus Staphylococcus aureus subsp. aureus 55/2053 3 Staphylococcus Staphylococcus epidermidis ATCC 12228 3 Staphylococcus Staphylococcus lugdunensis 2 Staphylococcus Staphylococcus saprophyticus 2 Staphylococcus Staphylococcus aureus USA300-ISMMS1 2 Staphylococcus Staphylococcus capitis 2 Staphylococcus Staphylococcus aureus subsp. aureus ST228 2 Staphylococcus Staphylococcus epidermidis RP62A 2 Staphylococcus Staphylococcus aureus subsp. aureus MRSA252 2 Staphylococcus Staphylococcus hominis subsp. hominis C80 2 Staphylococcus Staphylococcus equorum 1 Staphylococcus Staphylococcus aureus subsp. aureus SA40 1 Staphylococcus Staphylococcus aureus CA-347 1 Staphylococcus Staphylococcus epidermidis 1 Staphylococcus Staphylococcus aureus subsp. aureus USA300_FPR3757 1 Staphylococcus Staphylococcus lugdunensis N920143 1 Staphylococcus Staphylococcus aureus subsp. aureus ST398 1 Staphylococcus Staphylococcus aureus subsp. aureus COL 1 Staphylococcus Staphylococcus aureus subsp. aureus JKD6159 1 Staphylococcus Staphylococcus aureus subsp. aureus VC40 1 Staphylococcus Staphylococcus arlettae CVD059 1 Staphylococcus Staphylococcus aureus subsp. aureus TW20 1 Staphylococcus Staphylococcus haemolyticus 1 Staphylococcus Staphylococcus schleiferi 1 Staphylococcus Staphylococcus aureus subsp. aureus ED133 1 Staphylococcus Staphylococcus condimenti 1 Staphylococcus Staphylococcus microti 1 Staphylococcus Staphylococcus warneri SG1 1 Staphylococcus Staphylococcus lugdunensis HKU09-01 1 Staphylococcus Staphylococcus aureus subsp. aureus str. Newman 1 Staphylococcus Staphylococcus agnetis 1 Staphylococcus Staphylococcus pseudintermedius # 176 reads uniquely mapped to Streptococcus (multi-hits among diff. species in Streptococcus allowed) 17 Streptococcus Streptococcus pneumoniae 9 Streptococcus Streptococcus mitis 8 Streptococcus Streptococcus pneumoniae SPN032672 6 Streptococcus Streptococcus pneumoniae D39 6 Streptococcus Streptococcus sp. oral taxon 431 6 Streptococcus Streptococcus pyogenes 5 Streptococcus Streptococcus pneumoniae SPNA45 5 Streptococcus Streptococcus pneumoniae SPN994038 5 Streptococcus Streptococcus pneumoniae SPN033038 4 Streptococcus Streptococcus parasanguinis ATCC 15912 4 Streptococcus Streptococcus pneumoniae TCH8431/19A 4 Streptococcus Streptococcus agalactiae 4 Streptococcus Streptococcus pneumoniae 670-6B 3 Streptococcus Streptococcus pneumoniae TIGR4 3 Streptococcus Streptococcus agalactiae A909 3 Streptococcus Streptococcus pneumoniae G54 3 Streptococcus Streptococcus gordonii 3 Streptococcus Streptococcus sp. I-P16 3 Streptococcus Streptococcus pneumoniae OXC141 3 Streptococcus Streptococcus thermophilus 3 Streptococcus Streptococcus pneumoniae CGSP14 3 Streptococcus Streptococcus pneumoniae JJA 3 Streptococcus Streptococcus pneumoniae SPN994039 3 Streptococcus Streptococcus pneumoniae 70585 3 Streptococcus Streptococcus pneumoniae INV104 3 Streptococcus Streptococcus pneumoniae R6 3 Streptococcus Streptococcus pneumoniae ST556 2 Streptococcus Streptococcus constellatus subsp. pharyngis C232 2 Streptococcus Streptococcus pneumoniae INV200 2 Streptococcus Streptococcus oralis Uo5 2 Streptococcus Streptococcus oralis 2 Streptococcus Streptococcus gordonii str. Challis substr. CH1 2 Streptococcus Streptococcus himalayensis 2 Streptococcus Streptococcus mitis B6 2 Streptococcus Streptococcus constellatus subsp. pharyngis C818 2 Streptococcus Streptococcus constellatus subsp. pharyngis C1050 2 Streptococcus Streptococcus pantholopis 2 Streptococcus Streptococcus pneumoniae AP200 2 Streptococcus Streptococcus sanguinis SK36 2 Streptococcus Streptococcus iniae 2 Streptococcus Streptococcus pneumoniae Hungary19A-6 1 Streptococcus Streptococcus agalactiae CNCTC 10/84 1 Streptococcus Streptococcus pneumoniae Taiwan19F-14 1 Streptococcus Streptococcus massiliensis DSM 18628 1 Streptococcus Streptococcus pseudoporcinus LQ 940-04 1 Streptococcus Streptococcus ferus DSM 20646 1 Streptococcus Streptococcus caballi DSM 19004 1 Streptococcus Streptococcus anginosus subsp. whileyi MAS624 1 Streptococcus Streptococcus pneumoniae gamPNI0373 1 Streptococcus Streptococcus pyogenes MGAS9429 1 Streptococcus Streptococcus pneumoniae SPN034183 1 Streptococcus Streptococcus suis SC070731 1 Streptococcus Streptococcus parasanguinis FW213 1 Streptococcus Streptococcus dysgalactiae subsp. equisimilis GGS_124 1 Streptococcus Streptococcus suis 1 Streptococcus Streptococcus mutans NN2025 1 Streptococcus Streptococcus pyogenes M1 GAS 1 Streptococcus Streptococcus anginosus 1 Streptococcus Streptococcus urinalis 2285-97 1 Streptococcus Streptococcus pyogenes MGAS10750 1 Streptococcus Streptococcus thermophilus CNRZ1066 1 Streptococcus Streptococcus pyogenes MGAS8232 1 Streptococcus Streptococcus cristatus AS 1.3089 1 Streptococcus Streptococcus marmotae # 337 reads uniquely mapped to Streptomyces (multi-hits among diff. species in Streptomyces allowed) 176 Streptomyces Streptomyces sp. 150FB 68 Streptomyces Streptomyces roseoverticillatus 42 Streptomyces Streptomyces ghanaensis ATCC 14672 9 Streptomyces Streptomyces leeuwenhoekii 6 Streptomyces Streptomyces albus subsp. albus 5 Streptomyces Streptomyces sp. 3211 4 Streptomyces Streptomyces sp. MJM8645 4 Streptomyces Streptomyces specialis 3 Streptomyces Streptomyces sp. NRRL B-24484 2 Streptomyces Streptomyces sp. CNQ-509 2 Streptomyces Streptomyces yeochonensis CN732 1 Streptomyces Streptomyces sp. S10(2016) 1 Streptomyces Streptomyces pristinaespiralis 1 Streptomyces Streptomyces sp. TN58 1 Streptomyces Streptomyces paucisporeus 1 Streptomyces Streptomyces prasinopilosus 1 Streptomyces Streptomyces sp. WM4235 1 Streptomyces Streptomyces albus 1 Streptomyces Streptomyces sp. NRRL F-5053 1 Streptomyces Streptomyces sp. SBT349 1 Streptomyces Streptomyces pactum 1 Streptomyces Streptomyces purpureus KA281 1 Streptomyces Streptomyces sampsonii 1 Streptomyces Streptomyces viridifaciens 1 Streptomyces Streptomyces venezuelae 1 Streptomyces Streptomyces vietnamensis 1 Streptomyces Streptomyces sp. WMMB 714 # 17 reads uniquely mapped to Subdoligranulum (multi-hits among diff. species in Subdoligranulum allowed) 17 Subdoligranulum Subdoligranulum variabile DSM 15176 # 41 reads uniquely mapped to Sulfitobacter (multi-hits among diff. species in Sulfitobacter allowed) 7 Sulfitobacter Sulfitobacter geojensis 7 Sulfitobacter Sulfitobacter guttiformis KCTC 32187 6 Sulfitobacter Sulfitobacter mediterraneus KCTC 32188 6 Sulfitobacter Sulfitobacter pseudonitzschiae 5 Sulfitobacter Sulfitobacter noctilucicola 5 Sulfitobacter Sulfitobacter noctilucae 3 Sulfitobacter Sulfitobacter pontiacus 3SOLIMAR09 1 Sulfitobacter Sulfitobacter sp. AM1-D1 1 Sulfitobacter Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565 # 28 reads uniquely mapped to Synechococcus (multi-hits among diff. species in Synechococcus allowed) 4 Synechococcus Synechococcus sp. PCC 7335 3 Synechococcus Synechococcus sp. JA-3-3Ab 3 Synechococcus Synechococcus sp. PCC 7502 2 Synechococcus Synechococcus sp. KORDI-52 2 Synechococcus Synechococcus sp. RS9917 2 Synechococcus Synechococcus sp. PCC 7336 2 Synechococcus Synechococcus sp. JA-2-3B'a(2-13) 1 Synechococcus Synechococcus sp. PCC 73109 1 Synechococcus Synechococcus sp. PCC 7003 1 Synechococcus Synechococcus sp. WH 5701 1 Synechococcus Synechococcus sp. WH 8109 1 Synechococcus Synechococcus elongatus PCC 6301 1 Synechococcus Synechococcus sp. CC9311 1 Synechococcus Synechococcus sp. PCC 7117 1 Synechococcus Synechococcus sp. CB0205 1 Synechococcus Synechococcus sp. PCC 7002 1 Synechococcus Synechococcus sp. CC9605 # 37 reads uniquely mapped to Tateyamaria (multi-hits among diff. species in Tateyamaria allowed) 21 Tateyamaria Tateyamaria omphalii 16 Tateyamaria Tateyamaria sp. ANG-S1 # 44 reads uniquely mapped to Thalassobaculum (multi-hits among diff. species in Thalassobaculum allowed) 44 Thalassobaculum Thalassobaculum salexigens DSM 19539 # 41 reads uniquely mapped to Thioclava (multi-hits among diff. species in Thioclava allowed) 13 Thioclava Thioclava atlantica 12 Thioclava Thioclava nitratireducens 8 Thioclava Thioclava dalianensis 5 Thioclava Thioclava indica 3 Thioclava Thioclava pacifica DSM 10166 # 76 reads uniquely mapped to Variovorax (multi-hits among diff. species in Variovorax allowed) 33 Variovorax Variovorax sp. URHB0020 20 Variovorax Variovorax sp. PAMC 28711 13 Variovorax Variovorax paradoxus EPS 6 Variovorax Variovorax paradoxus S110 4 Variovorax Variovorax paradoxus B4 # 42 reads uniquely mapped to Veillonella (multi-hits among diff. species in Veillonella allowed) 17 Veillonella Veillonella parvula 14 Veillonella Veillonella parvula DSM 2008 7 Veillonella Veillonella seminalis ACS-216-V-Col6b 3 Veillonella Veillonella sp. oral taxon 780 str. F0422 1 Veillonella Veillonella magna DSM 19857 # 65 reads uniquely mapped to Verminephrobacter (multi-hits among diff. species in Verminephrobacter allowed) 42 Verminephrobacter Verminephrobacter eiseniae EF01-2 23 Verminephrobacter Verminephrobacter aporrectodeae subsp. tuberculatae At4 # 33 reads uniquely mapped to Weissella (multi-hits among diff. species in Weissella allowed) 12 Weissella Weissella cibaria 8 Weissella Weissella koreensis KACC 15510 4 Weissella Weissella ceti 2 Weissella Weissella jogaejeotgali 2 Weissella Weissella minor 2 Weissella Weissella oryzae SG25 1 Weissella Weissella kandleri 1 Weissella Weissella viridescens 1 Weissella Weissella paramesenteroides ATCC 33313