# 2020/11/12 14:31:36
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# SRR12951220	Replication ID
# SRR12951220	Sample ID
# SRR12951220_1	Read1
# NULL	Read2
R1	       95942391 (100.0000%)	[A] Total raw reads
R1	       95236513 (99.2643%)	[B] Total reads after QC of (A)
R1		
R1	       95236513 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       65468272 (68.7428%)	[F] Total mapped reads of (B-2)
R1	       29768241 (31.2572%)	[G] Total unmapped reads of (B-2)
R1	        2338785 (2.4558%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       92897728 (97.5442%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	         756897 (0.7948%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      8147.637	[I-3] RPMH of (I-1)
R1	      7947.550	[I-4] PPM of (I-1)
R1	    323628.294	[I-5] RPMU of (I-1)
R1	              1 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.011	[I-7] RPMH of (I-6)
R1	         0.011	[I-8] PPM of (I-6)
R1	         0.428	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2426.5571	2366.9666	96384.0823	541904	539967	1937	225421.646	41053841	ALL_R1	bacteria	Escherichia	0.0
2388.1753	2329.5273	94859.5339	537455	537377	78	221856.055	40717206	ALL_R1	bacteria	Shigella	5.25e-60
695.6742	678.5900	27632.5314	71706	30760	40946	64626.550	5435024	ALL_R1	bacteria	Akkermansia	0.0
593.5735	578.9968	23577.0428	203703	194294	9409	55141.634	15437311	ALL_R1	bacteria	Acinetobacter	0.0
542.2487	528.9324	21538.3941	231498	230075	1423	50373.673	17541642	ALL_R1	bacteria	Haemophilus	0.0
395.4108	385.7005	15705.9187	139827	138712	1115	36732.767	10592240	ALL_R1	bacteria	Lactobacillus	0.0
166.2733	162.1900	6604.4596	122192	121825	367	15446.411	9260257	ALL_R1	bacteria	Tolypothrix	3.04e-08
95.5410	93.1948	3794.9388	39310	38490	820	8875.546	2979341	ALL_R1	bacteria	Exiguobacterium	0.0
38.3765	37.4341	1524.3338	40274	39868	406	3565.089	3047652	ALL_R1	bacteria	Streptococcus	1.45e-08
37.8171	36.8884	1502.1150	48008	47611	397	3513.124	3639169	ALL_R1	bacteria	Deinococcus	1.38e-05
17.3394	16.9136	688.7307	18537	18331	206	1610.793	1402764	ALL_R1	bacteria	Anaerococcus	6.69e-05
<<
314.0595	306.3470	12474.6041	44483	43564	919	29175.417	3370788	ALL_R1	fungi	Candida	0.0
88.9188	86.7352	3531.9014	16728	16172	556	8260.358	1267529	ALL_R1	fungi	Glarea	5.03e-35
87.3720	85.2263	3470.4597	13118	12502	616	8116.659	994530	ALL_R1	fungi	Mitosporidium	1.95e-44
71.0906	69.3448	2823.7546	12199	11735	464	6604.155	923280	ALL_R1	fungi	Malassezia	1.21e-26
67.6421	65.9810	2686.7780	10993	10017	976	6283.796	832195	ALL_R1	fungi	Saitoella	2.32e-252
<<
7.0831	6.9091	281.3427	658	0	658	658.000	49893	ALL_R1	viral	Betacoronavirus	5.02e-128
4.1874	4.0846	166.3257	389	0	389	389.000	29515	ALL_R1	viral	Lentivirus	4.24e-05