# 2020/11/06 10:37:05 # HUMAN Target (Host) organism # RNA Sequencing source # SRR11772363 Replication ID # SRR11772363 Sample ID # SRR11772363_1 Read1 # SRR11772363_2 Read2 R1 3697990 (100.0000%) [A] Total raw reads R1 3516968 (95.1049%) [B] Total reads after QC of (A) R1 R1 3516968 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 5363383 (76.2501%) [B-3] Total mapped reads of (B-2)x2 R1 1670553 (23.7499%) [B-4] Total unmapped reads of (B-2)x2 R1 2735073 (77.7679%) [F] Total mapped reads of (B-2) R1 781895 (22.2321%) [G] Total unmapped reads of (B-2) R1 47284 (1.3445%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 3469684 (98.6555%) [J] Total mapped reads to host genome ( (B-2)-H) R1 13214 (0.3757%) [I-1] Total mapped reads of (H) to exo. genomes R1 3808.416 [I-3] RPMH of (I-1) R1 3757.214 [I-4] PPM of (I-1) R1 279460.282 [I-5] RPMU of (I-1) R1 1 (0.0000%) [I-6] Total chimeric reads of (I-1) R1 0.288 [I-7] RPMH of (I-6) R1 0.284 [I-8] PPM of (I-6) R1 21.149 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 3697990 (100.0000%) [A] Total raw reads R2 3516968 (95.1049%) [B] Total reads after QC of (A) R2 R2 3516968 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 5363383 (76.2501%) [B-3] Total mapped reads of (B-2)x2 R2 1670553 (23.7499%) [B-4] Total unmapped reads of (B-2)x2 R2 2628310 (74.7323%) [F] Total mapped reads of (B-2) R2 888658 (25.2677%) [G] Total unmapped reads of (B-2) R2 85334 (2.4264%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 3431634 (97.5736%) [J] Total mapped reads to host genome ( (B-2)-H) R2 13281 (0.3776%) [I-1] Total mapped reads of (H) to exo. genomes R2 3870.168 [I-3] RPMH of (I-1) R2 3776.264 [I-4] PPM of (I-1) R2 155635.503 [I-5] RPMU of (I-1) R2 1 (0.0000%) [I-6] Total chimeric reads of (I-1) R2 0.291 [I-7] RPMH of (I-6) R2 0.284 [I-8] PPM of (I-6) R2 11.719 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 338.9424 334.3855 24871.4787 3057 2559 498 1176.023 231055 ALL_R1 bacteria Dietzia 0.0 314.9336 310.6994 23109.7200 3383 3142 241 1092.720 255560 ALL_R1 bacteria Corynebacterium 0.0 261.2664 257.7538 19171.6437 1990 1780 210 906.512 150223 ALL_R1 bacteria Acinetobacter 0.0 246.2708 242.9598 18071.2715 2909 2841 68 854.482 219360 ALL_R1 bacteria Sphingomonas 1.22e-134 193.6029 191.0000 14206.5181 2071 1970 101 671.741 156377 ALL_R1 bacteria Cutibacterium 3.48e-176 183.8141 181.3428 13488.2201 2513 2448 65 637.777 189907 ALL_R1 bacteria Gordonia 4.80e-208 177.3859 175.0010 13016.5172 2109 2088 21 615.473 159278 ALL_R1 bacteria Propionibacterium 4.91e-10 175.5396 173.1796 12881.0380 1552 1520 32 609.067 117185 ALL_R1 bacteria Alkanindiges 1.92e-31 171.3649 169.0610 12574.6976 2460 2285 175 594.582 185884 ALL_R1 bacteria Brevibacterium 0.0 171.1118 168.8113 12556.1289 2503 2486 17 593.704 189138 ALL_R1 bacteria Rhodococcus 4.35e-05 165.7900 163.5611 12165.6163 1672 1614 58 575.239 126109 ALL_R1 bacteria Escherichia 1.35e-95 154.9795 152.8959 11372.3458 1565 1555 10 537.730 118037 ALL_R1 bacteria Enterobacter 1.16e-05 148.0726 146.0818 10865.5148 2247 2079 168 513.765 169724 ALL_R1 bacteria Nesterenkonia 0.0 146.7407 144.7679 10767.7861 1584 1567 17 509.144 119597 ALL_R1 bacteria Moraxella 2.41e-08 141.9907 140.0817 10419.2327 2380 2365 15 492.663 179595 ALL_R1 bacteria Comamonas 1.45e-08 141.1402 139.2427 10356.8226 1741 1550 191 489.712 131236 ALL_R1 bacteria Bacillus 0.0 140.8517 138.9580 10335.6527 2077 2012 65 488.711 156978 ALL_R1 bacteria Lawsonella 4.81e-80 140.0770 138.1938 10278.8047 2471 2444 27 486.023 186587 ALL_R1 bacteria Actinomyces 2.11e-29 137.0889 135.2458 10059.5339 2300 2283 17 475.655 173681 ALL_R1 bacteria Mycobacterium 9.64e-05 135.9680 134.1400 9977.2862 2320 2304 16 471.766 175018 ALL_R1 bacteria Nocardioides 8.16e-04 133.8828 132.0828 9824.2746 1629 1601 28 464.531 122884 ALL_R1 bacteria Pseudomonas 1.13e-18 108.0767 106.6237 7930.6319 2204 2190 14 374.992 166482 ALL_R1 bacteria Streptomyces 5.22e-05 91.5299 90.2994 6716.4368 1278 1234 44 317.580 96501 ALL_R1 bacteria Brevundimonas 1.04e-74 81.8135 80.7136 6003.4473 1302 1276 26 283.867 98251 ALL_R1 bacteria Lactobacillus 6.73e-11 77.4157 76.3749 5680.7377 1874 1861 13 268.608 141494 ALL_R1 bacteria Micrococcus 7.51e-05 76.0455 75.0231 5580.1963 1843 1827 16 263.854 139216 ALL_R1 bacteria Rothia 1.70e-08 70.5943 69.6452 5180.1878 1695 1683 12 244.940 128063 ALL_R1 bacteria Prevotella 1.62e-04 59.7487 58.9454 4384.3372 1169 1157 12 207.309 88109 ALL_R1 bacteria Methylobacterium 2.42e-04 59.0731 58.2789 4334.7644 969 893 76 204.965 73036 ALL_R1 bacteria Streptococcus 1.67e-136 57.1879 56.4191 4196.4301 1153 1141 12 198.424 86953 ALL_R1 bacteria Haemophilus 1.50e-07 56.0054 55.2524 4109.6565 1694 1677 17 194.321 127833 ALL_R1 bacteria Bifidobacterium 9.41e-08 50.5098 49.8307 3706.3912 1236 1214 22 175.253 93215 ALL_R1 bacteria Clostridium 2.97e-07 48.2096 47.5614 3537.6026 1066 1048 18 167.272 80468 ALL_R1 bacteria Neisseria 8.13e-06 46.1523 45.5318 3386.6424 737 708 29 160.134 55574 ALL_R1 bacteria Staphylococcus 3.09e-14 41.2046 40.6506 3023.5809 891 854 37 142.967 67226 ALL_R1 bacteria Paracoccus 5.73e-23 39.3817 38.8522 2889.8147 527 436 91 136.642 39777 ALL_R1 bacteria Deinococcus 0.0 36.5687 36.0771 2683.4024 278 183 95 126.882 21040 ALL_R1 bacteria Fibrella 0.0 21.0624 20.7793 1545.5545 667 649 18 73.080 50359 ALL_R1 bacteria Gemella 1.50e-07 15.4216 15.2142 1131.6301 458 432 26 53.508 34521 ALL_R1 bacteria Anaerococcus 9.40e-64 15.3899 15.1830 1129.3038 558 539 19 53.398 42096 ALL_R1 bacteria Peptoniphilus 1.38e-08 15.2319 15.0271 1117.7142 257 238 19 52.850 19472 ALL_R1 bacteria Spirosoma 5.69e-12 13.9883 13.8002 1026.4572 65 32 33 48.535 4933 ALL_R1 bacteria Gemmata 7.92e-18 12.1296 11.9666 890.0685 376 351 25 42.086 28364 ALL_R1 bacteria Fusobacterium 4.88e-08 8.8181 8.6995 647.0688 329 306 23 30.596 24841 ALL_R1 bacteria Leptotrichia 3.51e-08 6.9882 6.8943 512.7950 53 40 13 24.247 3991 ALL_R1 bacteria Singulisphaera 1.41e-05 6.2052 6.1218 455.3337 103 88 15 21.530 7773 ALL_R1 bacteria Fimbriimonas 5.40e-04 << 98.7528 97.4251 7246.4470 562 392 170 342.641 42331 ALL_R1 fungi Malassezia 0.0 38.7038 38.1835 2840.0728 333 316 17 134.290 24937 ALL_R1 fungi Leptosphaeria 1.82e-07 31.3948 30.9727 2303.7391 235 211 24 108.930 17657 ALL_R1 fungi Rhodotorula 4.21e-12 << 61.6771 60.8479 4525.8438 214 0 214 214.000 16129 ALL_R1 viral Betacoronavirus 0.0 << 345.2757 336.8981 13884.9696 3033 2470 563 1184.860 227322 ALL_R2 bacteria Dietzia 0.0 260.0161 253.7072 10456.3246 3059 2854 205 892.280 229021 ALL_R2 bacteria Corynebacterium 0.0 255.4637 249.2653 10273.2557 2007 1790 217 876.658 150033 ALL_R2 bacteria Acinetobacter 0.0 221.1777 215.8112 8894.4735 2881 2848 33 759.001 215484 ALL_R2 bacteria Sphingomonas 6.22e-28 207.6897 202.6504 8352.0637 2651 2558 93 712.715 198603 ALL_R2 bacteria Gordonia 0.0 202.9392 198.0152 8161.0261 2400 2129 271 696.413 179768 ALL_R2 bacteria Nesterenkonia 0.0 200.0417 195.1880 8044.5075 2125 2020 105 686.470 159007 ALL_R2 bacteria Cutibacterium 4.91e-189 183.3377 178.8893 7372.7705 2201 2181 20 629.148 164733 ALL_R2 bacteria Propionibacterium 6.06e-09 180.6603 176.2768 7265.0995 2594 2569 25 619.960 194316 ALL_R2 bacteria Rhodococcus 2.17e-11 164.5129 160.5212 6615.7452 2540 2524 16 564.548 189956 ALL_R2 bacteria Mycobacterium 3.79e-04 162.5759 158.6312 6537.8513 1573 1517 56 557.901 117636 ALL_R2 bacteria Alkanindiges 8.24e-105 156.3474 152.5538 6287.3767 1623 1573 50 536.527 121391 ALL_R2 bacteria Escherichia 5.26e-69 153.1110 149.3960 6157.2292 2374 2359 15 525.421 177892 ALL_R2 bacteria Kocuria 2.60e-05 149.6582 146.0269 6018.3749 1621 1585 36 513.572 121241 ALL_R2 bacteria Moraxella 2.31e-43 145.3407 141.8142 5844.7512 2190 2049 141 498.756 163849 ALL_R2 bacteria Brevibacterium 0.0 144.6608 141.1508 5817.4116 1664 1624 40 496.423 124504 ALL_R2 bacteria Pseudomonas 2.84e-40 135.0377 131.7612 5430.4263 2060 1988 72 463.400 154246 ALL_R2 bacteria Lawsonella 1.18e-98 125.8097 122.7572 5059.3316 2309 2297 12 431.733 172569 ALL_R2 bacteria Comamonas 2.26e-05 122.8628 119.8817 4940.8208 1840 1737 103 421.620 137485 ALL_R2 bacteria Bacillus 1.82e-282 121.4864 118.5388 4885.4736 2070 1970 100 416.897 154929 ALL_R2 bacteria Microbacterium 1.82e-166 80.9375 78.9737 3254.8339 1028 984 44 277.748 76833 ALL_R2 bacteria Brevundimonas 7.33e-74 79.6399 77.7076 3202.6508 1816 1799 17 273.295 135915 ALL_R2 bacteria Prevotella 2.74e-09 74.7527 72.9390 3006.1171 1816 1799 17 256.524 135883 ALL_R2 bacteria Micrococcus 2.10e-08 71.8917 70.1474 2891.0634 1870 1853 17 246.706 139989 ALL_R2 bacteria Dermacoccus 3.24e-12 68.1375 66.4843 2740.0919 1787 1773 14 233.823 133764 ALL_R2 bacteria Luteipulveratus 1.61e-04 63.9687 62.4165 2572.4447 1062 995 67 219.517 79233 ALL_R2 bacteria Streptococcus 1.27e-103 61.7344 60.2365 2482.5978 1110 1076 34 211.850 83002 ALL_R2 bacteria Methylobacterium 2.82e-36 54.3461 53.0275 2185.4829 1421 1405 16 186.496 106242 ALL_R2 bacteria Clostridium 6.76e-04 52.6635 51.3857 2117.8194 883 857 26 180.722 65986 ALL_R2 bacteria Staphylococcus 3.81e-11 51.8762 50.6175 2086.1556 1188 1169 19 178.020 88876 ALL_R2 bacteria Devosia 6.75e-17 47.6796 46.5227 1917.3952 1091 1062 29 163.619 81684 ALL_R2 bacteria Neisseria 1.92e-17 47.5980 46.4431 1914.1140 1538 1523 15 163.339 115047 ALL_R2 bacteria Bifidobacterium 1.29e-05 45.8706 44.7576 1844.6457 564 547 17 157.411 42125 ALL_R2 bacteria Tenacibaculum 3.71e-07 44.9850 43.8935 1809.0327 951 922 29 154.372 71178 ALL_R2 bacteria Bradyrhizobium 3.36e-12 42.4145 41.3854 1705.6625 933 897 36 145.551 69800 ALL_R2 bacteria Roseomonas 5.45e-23 39.9929 39.0225 1608.2804 750 638 112 137.241 56114 ALL_R2 bacteria Deinococcus 0.0 38.6145 37.6776 1552.8511 372 286 86 132.511 27855 ALL_R2 bacteria Fibrella 6.46e-262 37.0954 36.1954 1491.7618 961 952 9 127.298 71776 ALL_R2 bacteria Exiguobacterium 6.25e-04 28.2717 27.5857 1136.9208 454 430 24 97.018 33895 ALL_R2 bacteria Chryseobacterium 1.60e-17 21.2077 20.6931 852.8488 802 778 24 72.777 59972 ALL_R2 bacteria Peptoniphilus 4.95e-14 17.9288 17.4938 720.9905 630 614 16 61.525 47122 ALL_R2 bacteria Anaerococcus 1.25e-22 16.5828 16.1804 666.8620 120 75 45 56.906 8968 ALL_R2 bacteria Gemmata 6.01e-34 12.1712 11.8759 489.4532 652 632 20 41.767 48714 ALL_R2 bacteria Oscillibacter 3.09e-06 10.7992 10.5372 434.2818 442 418 24 37.059 33040 ALL_R2 bacteria Leptotrichia 6.65e-09 9.8271 9.5887 395.1883 398 378 20 33.723 29636 ALL_R2 bacteria Fusobacterium 6.38e-05 7.0389 6.8681 283.0642 140 120 20 24.155 10454 ALL_R2 bacteria Fimbriimonas 2.06e-07 << 109.4601 106.8042 4401.8445 557 308 249 375.627 41622 ALL_R2 fungi Malassezia 0.0 30.4694 29.7302 1225.3029 266 239 27 104.560 19793 ALL_R2 fungi Rhodotorula 1.49e-15 << 66.4407 64.8286 2671.8541 228 0 228 228.000 16992 ALL_R2 viral Betacoronavirus 0.0 << 0.2914 0.2843 11.7187 1 0 1 1.000 74 R2U fungi Microsporum n/a