#Unique_Reads Genus Species # 127 reads uniquely mapped to Abiotrophia (multi-hits among diff. species in Abiotrophia allowed) 127 Abiotrophia Abiotrophia defectiva ATCC 49176 # 615 reads uniquely mapped to Acinetobacter (multi-hits among diff. species in Acinetobacter allowed) 174 Acinetobacter Acinetobacter baumannii 78 Acinetobacter Acinetobacter johnsonii XBB1 23 Acinetobacter Acinetobacter pittii 21 Acinetobacter Acinetobacter parvus DSM 16617 = CIP 108168 16 Acinetobacter Acinetobacter nectaris CIP 110549 16 Acinetobacter Acinetobacter brisouii CIP 110357 12 Acinetobacter Acinetobacter rudis 12 Acinetobacter Acinetobacter bereziniae LMG 1003 = CIP 70.12 12 Acinetobacter Acinetobacter junii 11 Acinetobacter Acinetobacter sp. NCu2D-2 11 Acinetobacter Acinetobacter ursingii DSM 16037 = CIP 107286 10 Acinetobacter Acinetobacter sp. ADP1 10 Acinetobacter Acinetobacter haemolyticus 10 Acinetobacter Acinetobacter baumannii ZW85-1 9 Acinetobacter Acinetobacter larvae 8 Acinetobacter Acinetobacter lwoffii NCTC 5866 = CIP 64.10 = NIPH 512 8 Acinetobacter Acinetobacter baumannii ACICU 8 Acinetobacter Acinetobacter harbinensis 8 Acinetobacter Acinetobacter calcoaceticus 8 Acinetobacter Acinetobacter equi 8 Acinetobacter Acinetobacter sp. TTH0-4 7 Acinetobacter Acinetobacter oleivorans DR1 7 Acinetobacter Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 7 Acinetobacter Acinetobacter gerneri DSM 14967 = CIP 107464 7 Acinetobacter Acinetobacter baumannii MDR-ZJ06 6 Acinetobacter Acinetobacter bouvetii DSM 14964 = CIP 107468 6 Acinetobacter Acinetobacter tandoii DSM 14970 = CIP 107469 6 Acinetobacter Acinetobacter schindleri 6 Acinetobacter Acinetobacter bohemicus ANC 3994 6 Acinetobacter Acinetobacter baumannii 1656-2 6 Acinetobacter Acinetobacter schindleri CIP 107287 6 Acinetobacter Acinetobacter baumannii BJAB0715 6 Acinetobacter Acinetobacter baumannii TYTH-1 5 Acinetobacter Acinetobacter nosocomialis 5 Acinetobacter Acinetobacter beijerinckii CIP 110307 5 Acinetobacter Acinetobacter indicus CIP 110367 5 Acinetobacter Acinetobacter gyllenbergii NIPH 230 5 Acinetobacter Acinetobacter baumannii BJAB0868 5 Acinetobacter NC_011586 4 Acinetobacter Acinetobacter baumannii LAC-4 4 Acinetobacter Acinetobacter baumannii MDR-TJ 4 Acinetobacter Acinetobacter baumannii AYE 4 Acinetobacter Acinetobacter soli 3 Acinetobacter Acinetobacter baumannii D1279779 3 Acinetobacter Acinetobacter baumannii DU202 3 Acinetobacter Acinetobacter baumannii BJAB07104 2 Acinetobacter Acinetobacter baumannii NCGM 237 2 Acinetobacter Acinetobacter sp. TGL-Y2 2 Acinetobacter Acinetobacter towneri 2 Acinetobacter Acinetobacter sp. Ver3 1 Acinetobacter NZ_CP015483 1 Acinetobacter Acinetobacter bohemicus 1 Acinetobacter Acinetobacter pittii PHEA-2 # 638 reads uniquely mapped to Actinomyces (multi-hits among diff. species in Actinomyces allowed) 127 Actinomyces Actinomyces sp. VUL4_3 79 Actinomyces Actinomyces vaccimaxillae DSM 15804 73 Actinomyces Actinomyces polynesiensis 57 Actinomyces Actinomyces turicensis ACS-279-V-Col4 31 Actinomyces Actinomyces timonensis DSM 23838 26 Actinomyces Actinomyces oris 25 Actinomyces Actinomyces sp. oral taxon 414 23 Actinomyces Actinomyces graevenitzii C83 22 Actinomyces Actinomyces radicidentis 19 Actinomyces Actinomyces odontolyticus ATCC 17982 18 Actinomyces Actinomyces sp. oral taxon 848 str. F0332 18 Actinomyces Actinomyces europaeus ACS-120-V-Col10b 16 Actinomyces Actinomyces dentalis DSM 19115 13 Actinomyces Actinomyces urogenitalis DSM 15434 11 Actinomyces Actinomyces slackii ATCC 49928 10 Actinomyces Actinomyces massiliensis 4401292 10 Actinomyces Actinomyces hongkongensis 9 Actinomyces Actinomyces johnsonii F0542 8 Actinomyces Actinomyces cardiffensis F0333 8 Actinomyces Actinomyces neuii subsp. neuii DSM 8576 8 Actinomyces Actinomyces sp. oral taxon 448 str. F0400 7 Actinomyces Actinomyces coleocanis DSM 15436 7 Actinomyces Actinomyces gerencseriae DSM 6844 5 Actinomyces Actinomyces meyeri 4 Actinomyces Actinomyces sp. Marseille-P2985 4 Actinomyces Actinomyces suimastitidis DSM 15538 # 207 reads uniquely mapped to Aerococcus (multi-hits among diff. species in Aerococcus allowed) 69 Aerococcus Aerococcus sanguinicola 48 Aerococcus Aerococcus urinaehominis 39 Aerococcus Aerococcus urinaeequi 20 Aerococcus Aerococcus christensenii 15 Aerococcus Aerococcus viridans 10 Aerococcus Aerococcus urinae 6 Aerococcus Aerococcus urinae ACS-120-V-Col10a # 383 reads uniquely mapped to Aeromonas (multi-hits among diff. species in Aeromonas allowed) 97 Aeromonas Aeromonas hydrophila 61 Aeromonas Aeromonas schubertii 31 Aeromonas Aeromonas salmonicida subsp. salmonicida A449 26 Aeromonas Aeromonas veronii 21 Aeromonas Aeromonas media WS 20 Aeromonas Aeromonas hydrophila YL17 17 Aeromonas Aeromonas hydrophila J-1 15 Aeromonas Aeromonas veronii B565 14 Aeromonas Aeromonas hydrophila subsp. hydrophila ATCC 7966 13 Aeromonas Aeromonas hydrophila ML09-119 13 Aeromonas Aeromonas hydrophila AL09-71 13 Aeromonas Aeromonas hydrophila pc104A 11 Aeromonas Aeromonas hydrophila 4AK4 11 Aeromonas Aeromonas hydrophila NJ-35 8 Aeromonas Aeromonas aquatica 5 Aeromonas Aeromonas simiae 4 Aeromonas Aeromonas eucrenophila 3 Aeromonas Aeromonas enteropelogenes # 421 reads uniquely mapped to Ahrensia (multi-hits among diff. species in Ahrensia allowed) 242 Ahrensia Ahrensia kielensis DSM 5890 179 Ahrensia Ahrensia sp. R2A130 # 351 reads uniquely mapped to Alkanindiges (multi-hits among diff. species in Alkanindiges allowed) 351 Alkanindiges Alkanindiges illinoisensis DSM 15370 # 196 reads uniquely mapped to Alloscardovia (multi-hits among diff. species in Alloscardovia allowed) 119 Alloscardovia Alloscardovia criceti DSM 17774 77 Alloscardovia Alloscardovia omnicolens DSM 21503 # 96 reads uniquely mapped to Anaerococcus (multi-hits among diff. species in Anaerococcus allowed) 20 Anaerococcus Anaerococcus prevotii DSM 20548 19 Anaerococcus Anaerococcus hydrogenalis DSM 7454 16 Anaerococcus Anaerococcus pacaensis 9403502 15 Anaerococcus Anaerococcus mediterraneensis 7 Anaerococcus Anaerococcus provenciensis 6 Anaerococcus Anaerococcus tetradius ATCC 35098 5 Anaerococcus Anaerococcus prevotii ACS-065-V-Col13 5 Anaerococcus Anaerococcus obesiensis ph10 3 Anaerococcus Anaerococcus lactolyticus ATCC 51172 # 251 reads uniquely mapped to Aquabacterium (multi-hits among diff. species in Aquabacterium allowed) 132 Aquabacterium Aquabacterium parvum 119 Aquabacterium Aquabacterium sp. NJ1 # 626 reads uniquely mapped to Arthrobacter (multi-hits among diff. species in Arthrobacter allowed) 72 Arthrobacter Arthrobacter sp. YC-RL1 71 Arthrobacter Arthrobacter sp. ZXY-2 56 Arthrobacter Arthrobacter alpinus 39 Arthrobacter Arthrobacter sp. H14 36 Arthrobacter Arthrobacter castelli DSM 16402 34 Arthrobacter Arthrobacter sp. U41 34 Arthrobacter Arthrobacter sp. Rue61a 28 Arthrobacter Arthrobacter sp. QXT-31 27 Arthrobacter Arthrobacter sp. L77 24 Arthrobacter Arthrobacter sp. ATCC 21022 23 Arthrobacter Arthrobacter sp. LS16 23 Arthrobacter Arthrobacter crystallopoietes BAB-32 20 Arthrobacter Arthrobacter sp. FB24 16 Arthrobacter Arthrobacter sp. H5 16 Arthrobacter Arthrobacter sp. ERGS1:01 15 Arthrobacter Arthrobacter sp. A3 15 Arthrobacter Arthrobacter sp. 35W 11 Arthrobacter Arthrobacter sp. IHBB 11108 11 Arthrobacter Arthrobacter sp. H20 10 Arthrobacter Arthrobacter sp. PAMC 25486 10 Arthrobacter Arthrobacter sp. Soil782 10 Arthrobacter Arthrobacter sp. Br18 7 Arthrobacter Arthrobacter sp. Edens01 6 Arthrobacter Arthrobacter sp. Hiyo1 6 Arthrobacter Arthrobacter sp. Soil763 4 Arthrobacter Arthrobacter sp. Leaf141 2 Arthrobacter Arthrobacter globiformis NBRC 12137 # 601 reads uniquely mapped to Asticcacaulis (multi-hits among diff. species in Asticcacaulis allowed) 236 Asticcacaulis Asticcacaulis sp. AC466 153 Asticcacaulis Asticcacaulis excentricus CB 48 133 Asticcacaulis Asticcacaulis sp. YBE204 46 Asticcacaulis Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 33 Asticcacaulis Asticcacaulis biprosthecum C19 # 566 reads uniquely mapped to Bacillus (multi-hits among diff. species in Bacillus allowed) 52 Bacillus Bacillus subtilis 49 Bacillus Bacillus subtilis subsp. subtilis 33 Bacillus Bacillus thuringiensis 27 Bacillus Bacillus sp. FJAT-14266 25 Bacillus Bacillus anthracis 18 Bacillus Bacillus manliponensis 16 Bacillus NZ_CP014858 15 Bacillus Bacillus cellulosilyticus DSM 2522 12 Bacillus Bacillus coagulans 12 Bacillus Bacillus sp. FJAT-18019 11 Bacillus Bacillus humi 10 Bacillus Bacillus cereus 10 Bacillus Bacillus sp. X1(2014) 10 Bacillus Bacillus sp. FJAT-25496 9 Bacillus Bacillus sp. OxB-1 9 Bacillus Bacillus amyloliquefaciens 9 Bacillus Bacillus subtilis subsp. subtilis str. BSP1 8 Bacillus Bacillus velezensis 8 Bacillus Bacillus azotoformans LMG 9581 8 Bacillus Bacillus muralis 8 Bacillus Bacillus sp. FJAT-18017 7 Bacillus Bacillus pumilus 7 Bacillus Bacillus bataviensis LMG 21833 7 Bacillus Bacillus andreraoultii 7 Bacillus Bacillus halodurans C-125 6 Bacillus Bacillus smithii 5 Bacillus Bacillus subtilis BEST7003 5 Bacillus Bacillus rubiinfantis 5 Bacillus Bacillus ndiopicus 5 Bacillus Bacillus subtilis subsp. subtilis str. 168 4 Bacillus Bacillus subtilis TO-A 4 Bacillus Bacillus endophyticus 4 Bacillus Bacillus sp. 275 4 Bacillus Bacillus subtilis subsp. subtilis str. BAB-1 4 Bacillus Bacillus coagulans 36D1 4 Bacillus Bacillus beveridgei 3 Bacillus Bacillus safensis 3 Bacillus Bacillus sp. SDLI1 3 Bacillus Bacillus subtilis subsp. subtilis 6051-HGW 3 Bacillus Bacillus infantis NRRL B-14911 3 Bacillus Bacillus sp. FJAT-22090 3 Bacillus [Bacillus thuringiensis] serovar konkukian str. 97-27 3 Bacillus Bacillus subtilis subsp. subtilis str. OH 131.1 3 Bacillus Bacillus thuringiensis str. Al Hakam 3 Bacillus Bacillus shackletonii 3 Bacillus Bacillus subtilis subsp. subtilis str. JH642 substr. AG174 3 Bacillus Bacillus gobiensis 3 Bacillus Bacillus subtilis subsp. natto BEST195 3 Bacillus Bacillus cecembensis 3 Bacillus Bacillus sp. FJAT-27916 3 Bacillus Bacillus flexus 2 Bacillus Bacillus subtilis subsp. inaquosorum 2 Bacillus Bacillus oceanisediminis 2691 2 Bacillus Bacillus megaterium WSH-002 2 Bacillus Bacillus subtilis PY79 2 Bacillus Bacillus thuringiensis Bt407 2 Bacillus Bacillus cereus G9842 2 Bacillus Bacillus sp. 2 Bacillus Bacillus thuringiensis HD-771 2 Bacillus Bacillus weihaiensis 2 Bacillus Bacillus licheniformis 2 Bacillus Bacillus mycoides 2 Bacillus Bacillus clausii 2 Bacillus Bacillus subtilis subsp. globigii 2 Bacillus Bacillus cereus E33L 2 Bacillus Bacillus coagulans 2-6 2 Bacillus Bacillus weihenstephanensis 2 Bacillus Bacillus coagulans DSM 1 = ATCC 7050 2 Bacillus Bacillus subtilis QB928 2 Bacillus Bacillus subtilis HJ5 1 Bacillus Bacillus subtilis subsp. subtilis str. RO-NN-1 1 Bacillus Bacillus velezensis UCMB5033 1 Bacillus Bacillus cereus D17 1 Bacillus Bacillus thermotolerans 1 Bacillus Bacillus anthracis str. A16 1 Bacillus Bacillus campisalis 1 Bacillus Bacillus subtilis XF-1 1 Bacillus Bacillus anthracis str. V770-NP-1R 1 Bacillus Bacillus coahuilensis m4-4 1 Bacillus Bacillus pseudofirmus OF4 1 Bacillus Bacillus mannanilyticus JCM 10596 1 Bacillus Bacillus lehensis G1 1 Bacillus Bacillus simplex 1 Bacillus Bacillus paralicheniformis ATCC 9945a 1 Bacillus Bacillus atrophaeus subsp. globigii 1 Bacillus Bacillus sp. FJAT-14578 1 Bacillus Bacillus licheniformis DSM 13 = ATCC 14580 1 Bacillus Bacillus cereus AH187 1 Bacillus Bacillus cereus 03BB102 1 Bacillus Bacillus thermoamylovorans 1 Bacillus Bacillus sp. JS 1 Bacillus Bacillus subtilis subsp. natto 1 Bacillus Bacillus subtilis subsp. subtilis str. AG1839 1 Bacillus Bacillus solani 1 Bacillus Bacillus sp. ABP14 1 Bacillus Bacillus cereus G9241 1 Bacillus Bacillus subtilis subsp. spizizenii TU-B-10 1 Bacillus Bacillus subtilis KCTC 1028 1 Bacillus Bacillus pumilus SAFR-032 1 Bacillus Bacillus sp. B-jedd 1 Bacillus Bacillus velezensis UCMB5036 1 Bacillus Bacillus niacini 1 Bacillus Bacillus weihenstephanensis KBAB4 1 Bacillus Bacillus amyloliquefaciens IT-45 1 Bacillus Bacillus velezensis AS43.3 1 Bacillus Bacillus methanolicus MGA3 1 Bacillus Bacillus indicus 1 Bacillus Bacillus thuringiensis serovar morrisoni 1 Bacillus Bacillus okuhidensis 1 Bacillus Bacillus megaterium 1 Bacillus Bacillus sp. 1NLA3E 1 Bacillus Bacillus testis 1 Bacillus Bacillus atrophaeus 1942 1 Bacillus Bacillus timonensis 1 Bacillus Bacillus sp. Pc3 1 Bacillus Bacillus sp. FDAARGOS_235 # 154 reads uniquely mapped to Bacteriovorax (multi-hits among diff. species in Bacteriovorax allowed) 140 Bacteriovorax Bacteriovorax sp. Seq25_V 14 Bacteriovorax Bacteriovorax sp. BAL6_X # 173 reads uniquely mapped to Bdellovibrio (multi-hits among diff. species in Bdellovibrio allowed) 57 Bdellovibrio Bdellovibrio exovorus JSS 41 Bdellovibrio Bdellovibrio bacteriovorus HD100 33 Bdellovibrio Bdellovibrio bacteriovorus str. Tiberius 26 Bdellovibrio Bdellovibrio bacteriovorus W 16 Bdellovibrio Bdellovibrio bacteriovorus # 539 reads uniquely mapped to Bifidobacterium (multi-hits among diff. species in Bifidobacterium allowed) 105 Bifidobacterium Bifidobacterium longum subsp. longum 59 Bifidobacterium Bifidobacterium cuniculi 40 Bifidobacterium Bifidobacterium actinocoloniiforme DSM 22766 33 Bifidobacterium Bifidobacterium gallicum DSM 20093 = LMG 11596 27 Bifidobacterium Bifidobacterium minimum 26 Bifidobacterium Bifidobacterium stellenboschense 26 Bifidobacterium Bifidobacterium crudilactis 22 Bifidobacterium Bifidobacterium bombi DSM 19703 18 Bifidobacterium Bifidobacterium psychraerophilum 18 Bifidobacterium Bifidobacterium asteroides PRL2011 13 Bifidobacterium Bifidobacterium scardovii JCM 12489 = DSM 13734 13 Bifidobacterium Bifidobacterium magnum 12 Bifidobacterium Bifidobacterium adolescentis 9 Bifidobacterium Bifidobacterium saguini DSM 23967 9 Bifidobacterium Bifidobacterium biavatii DSM 23969 8 Bifidobacterium Bifidobacterium breve 8 Bifidobacterium Bifidobacterium animalis subsp. lactis AD011 8 Bifidobacterium Bifidobacterium mongoliense DSM 21395 6 Bifidobacterium Bifidobacterium bifidum 6 Bifidobacterium Bifidobacterium callitrichos DSM 23973 5 Bifidobacterium Bifidobacterium coryneforme 5 Bifidobacterium Bifidobacterium subtile 5 Bifidobacterium Bifidobacterium angulatum 4 Bifidobacterium Bifidobacterium choerinum 4 Bifidobacterium Bifidobacterium longum subsp. longum KACC 91563 3 Bifidobacterium Bifidobacterium breve ACS-071-V-Sch8b 3 Bifidobacterium Bifidobacterium breve JCM 7017 3 Bifidobacterium Bifidobacterium adolescentis ATCC 15703 3 Bifidobacterium Bifidobacterium longum NCC2705 3 Bifidobacterium Bifidobacterium angulatum DSM 20098 = JCM 7096 3 Bifidobacterium Bifidobacterium indicum LMG 11587 = DSM 20214 3 Bifidobacterium Bifidobacterium longum subsp. longum BBMN68 3 Bifidobacterium Bifidobacterium dentium Bd1 2 Bifidobacterium Bifidobacterium breve UCC2003 2 Bifidobacterium Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 2 Bifidobacterium Bifidobacterium longum 2 Bifidobacterium Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 2 Bifidobacterium Bifidobacterium pseudolongum PV8-2 1 Bifidobacterium Bifidobacterium longum DJO10A 1 Bifidobacterium NZ_CP015407 1 Bifidobacterium Bifidobacterium animalis subsp. lactis CNCM I-2494 1 Bifidobacterium Bifidobacterium breve NCFB 2258 1 Bifidobacterium Bifidobacterium breve 12L 1 Bifidobacterium Bifidobacterium thermophilum RBL67 1 Bifidobacterium Bifidobacterium breve S27 1 Bifidobacterium Bifidobacterium longum subsp. infantis 157F 1 Bifidobacterium Bifidobacterium bifidum BGN4 1 Bifidobacterium Bifidobacterium kashiwanohense PV20-2 1 Bifidobacterium Bifidobacterium gallinarum 1 Bifidobacterium Bifidobacterium animalis 1 Bifidobacterium Bifidobacterium breve JCM 7019 1 Bifidobacterium Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 1 Bifidobacterium Bifidobacterium longum subsp. infantis 1 Bifidobacterium Bifidobacterium breve DSM 20213 = JCM 1192 # 143 reads uniquely mapped to Blautia (multi-hits among diff. species in Blautia allowed) 54 Blautia NZ_CP015405 33 Blautia Ruminococcus gnavus AGR2154 25 Blautia Ruminococcus torques ATCC 27756 14 Blautia Blautia hansenii DSM 20583 11 Blautia Blautia obeum ATCC 29174 5 Blautia Blautia obeum 1 Blautia Blautia hydrogenotrophica DSM 10507 # 415 reads uniquely mapped to Bosea (multi-hits among diff. species in Bosea allowed) 146 Bosea Bosea sp. 117 51 Bosea Bosea vaviloviae 47 Bosea Bosea thiooxidans 34 Bosea Bosea sp. Root483D1 29 Bosea Bosea sp. UNC402CLCol 27 Bosea Bosea sp. Leaf344 26 Bosea Bosea sp. Root381 26 Bosea Bosea sp. RAC05 16 Bosea Bosea sp. LC85 13 Bosea Bosea sp. PAMC 26642 # 383 reads uniquely mapped to Bradyrhizobium (multi-hits among diff. species in Bradyrhizobium allowed) 37 Bradyrhizobium Bradyrhizobium sp. LTSP857 32 Bradyrhizobium Bradyrhizobium sp. ORS 278 32 Bradyrhizobium Bradyrhizobium japonicum 26 Bradyrhizobium Bradyrhizobium neotropicale 24 Bradyrhizobium Bradyrhizobium oligotrophicum S58 23 Bradyrhizobium Bradyrhizobium elkanii WSM2783 23 Bradyrhizobium Bradyrhizobium icense 22 Bradyrhizobium Bradyrhizobium valentinum 22 Bradyrhizobium Bradyrhizobium sp. S23321 19 Bradyrhizobium Bradyrhizobium sp. BTAi1 18 Bradyrhizobium Bradyrhizobium lablabi 17 Bradyrhizobium Bradyrhizobium genosp. SA-4 str. CB756 16 Bradyrhizobium Bradyrhizobium sp. Tv2a-2 12 Bradyrhizobium Bradyrhizobium sp. 11 Bradyrhizobium Bradyrhizobium elkanii USDA 76 9 Bradyrhizobium Bradyrhizobium sp. URHD0069 9 Bradyrhizobium Bradyrhizobium diazoefficiens 8 Bradyrhizobium Bradyrhizobium japonicum USDA 6 7 Bradyrhizobium Bradyrhizobium sp. AS23.2 6 Bradyrhizobium Bradyrhizobium diazoefficiens USDA 110 6 Bradyrhizobium Bradyrhizobium sp. STM 3843 2 Bradyrhizobium Bradyrhizobium sp. CCGE-LA001 1 Bradyrhizobium Bradyrhizobium sp. LTSP885 1 Bradyrhizobium Bradyrhizobium sp. ARR65 # 793 reads uniquely mapped to Brevibacterium (multi-hits among diff. species in Brevibacterium allowed) 270 Brevibacterium Brevibacterium ravenspurgense 5401308 = CCUG 53855 194 Brevibacterium Brevibacterium linens 131 Brevibacterium Brevibacterium senegalense 91 Brevibacterium Brevibacterium album DSM 18261 84 Brevibacterium Brevibacterium mcbrellneri ATCC 49030 23 Brevibacterium Brevibacterium casei S18 # 512 reads uniquely mapped to Brevundimonas (multi-hits among diff. species in Brevundimonas allowed) 70 Brevundimonas Brevundimonas aveniformis DSM 17977 59 Brevundimonas Brevundimonas diminuta ATCC 11568 56 Brevundimonas Brevundimonas sp. GW460-12-10-14-LB2 55 Brevundimonas Brevundimonas naejangsanensis 54 Brevundimonas Brevundimonas subvibrioides ATCC 15264 52 Brevundimonas Brevundimonas abyssalis TAR-001 44 Brevundimonas Brevundimonas sp. Leaf363 26 Brevundimonas Brevundimonas sp. DS20 23 Brevundimonas Brevundimonas bacteroides DSM 4726 23 Brevundimonas Brevundimonas sp. Root1279 20 Brevundimonas Brevundimonas sp. LM2 19 Brevundimonas Brevundimonas nasdae 11 Brevundimonas Brevundimonas sp. Root608 # 428 reads uniquely mapped to Burkholderia (multi-hits among diff. species in Burkholderia allowed) 43 Burkholderia Burkholderia cenocepacia 33 Burkholderia Burkholderia pseudomallei 33 Burkholderia Candidatus Burkholderia crenata 18 Burkholderia Burkholderia vietnamiensis 14 Burkholderia Burkholderia ubonensis 14 Burkholderia Burkholderia mallei 14 Burkholderia Burkholderia lata 13 Burkholderia Burkholderia cepacia 10 Burkholderia Burkholderia stabilis 8 Burkholderia Burkholderia thailandensis 7 Burkholderia Burkholderia glumae BGR1 7 Burkholderia Burkholderia contaminans 7 Burkholderia Burkholderia sp. HB1 7 Burkholderia Burkholderia sp. OLGA172 6 Burkholderia Burkholderia multivorans 6 Burkholderia Burkholderia metallica 6 Burkholderia Burkholderia thailandensis 34 6 Burkholderia Burkholderia cenocepacia AU 1054 5 Burkholderia Burkholderia vietnamiensis LMG 10929 5 Burkholderia Burkholderia multivorans ATCC 17616 5 Burkholderia Burkholderia pseudomallei 7894 5 Burkholderia Burkholderia dolosa AU0158 5 Burkholderia Burkholderia latens 5 Burkholderia Burkholderia diffusa 5 Burkholderia Burkholderia sp. CCGE1002 4 Burkholderia Burkholderia pseudomallei MSHR520 4 Burkholderia Burkholderia sp. YI23 4 Burkholderia Burkholderia pseudomallei Pasteur 52237 4 Burkholderia Burkholderia sp. 2002721687 4 Burkholderia Burkholderia ambifaria AMMD 4 Burkholderia Burkholderia pseudomallei 1026b 4 Burkholderia Burkholderia sp. RPE67 4 Burkholderia Burkholderia cenocepacia MC0-3 4 Burkholderia Burkholderia cenocepacia J2315 3 Burkholderia Burkholderia ubonensis MSMB22 3 Burkholderia Burkholderia sp. PAMC 26561 3 Burkholderia Burkholderia territorii 3 Burkholderia Burkholderia cenocepacia HI2424 3 Burkholderia Burkholderia ambifaria MC40-6 3 Burkholderia Burkholderia glumae PG1 3 Burkholderia Burkholderia oklahomensis 3 Burkholderia Burkholderia seminalis 3 Burkholderia Burkholderia pseudomallei HBPUB10134a 3 Burkholderia Burkholderia thailandensis E444 3 Burkholderia Burkholderia sp. JPY347 3 Burkholderia Burkholderia cepacia GG4 3 Burkholderia NC_022659 3 Burkholderia Burkholderia sp. CCGE1001 2 Burkholderia Burkholderia sp. Bp5365 2 Burkholderia Burkholderia pseudomallei K96243 2 Burkholderia Burkholderia sp. KJ006 2 Burkholderia Burkholderia mallei SAVP1 2 Burkholderia Burkholderia glumae LMG 2196 = ATCC 33617 2 Burkholderia Burkholderia cenocepacia H111 2 Burkholderia Burkholderia pseudomultivorans 2 Burkholderia Burkholderia thailandensis 2002721643 2 Burkholderia Burkholderia mallei ATCC 23344 2 Burkholderia Burkholderia cepacia ATCC 25416 2 Burkholderia Burkholderia gladioli BSR3 2 Burkholderia Burkholderia pseudomallei 576 2 Burkholderia Burkholderia mallei NCTC 10247 2 Burkholderia Burkholderia pyrrocinia 2 Burkholderia Burkholderia thailandensis E264 2 Burkholderia Burkholderia multivorans ATCC BAA-247 2 Burkholderia Burkholderia sp. RPE64 2 Burkholderia Burkholderia pseudomallei K42 2 Burkholderia Burkholderia pseudomallei NCTC 13178 1 Burkholderia Burkholderia pseudomallei 1710b 1 Burkholderia Burkholderia pseudomallei 668 1 Burkholderia Burkholderia pseudomallei HBPUB10303a 1 Burkholderia Burkholderia pseudomallei BPC006 1 Burkholderia Burkholderia pseudomallei MSHR5858 1 Burkholderia Burkholderia pseudomallei MSHR5848 1 Burkholderia Burkholderia thailandensis MSMB59 1 Burkholderia Burkholderia thailandensis 2002721723 1 Burkholderia Burkholderia thailandensis USAMRU Malaysia #20 1 Burkholderia Burkholderia sp. CCGE1003 1 Burkholderia Burkholderia thailandensis H0587 1 Burkholderia Burkholderia pseudomallei MSHR840 1 Burkholderia Burkholderia pseudomallei NAU20B-16 1 Burkholderia Burkholderia plantarii 1 Burkholderia Burkholderia pseudomallei MSHR491 1 Burkholderia Burkholderia pseudomallei MSHR511 1 Burkholderia Burkholderia thailandensis MSMB121 1 Burkholderia Burkholderia pseudomallei MSHR305 1 Burkholderia Burkholderia pseudomallei A79A 1 Burkholderia Burkholderia oklahomensis C6786 1 Burkholderia Burkholderia pseudomallei MSHR2543 1 Burkholderia Burkholderia gladioli 1 Burkholderia Burkholderia pseudomallei MSHR62 1 Burkholderia Burkholderia pseudomallei B03 1 Burkholderia Burkholderia thailandensis E254 # 223 reads uniquely mapped to Campylobacter (multi-hits among diff. species in Campylobacter allowed) 124 Campylobacter Campylobacter mucosalis 34 Campylobacter Campylobacter jejuni subsp. jejuni PT14 15 Campylobacter Campylobacter coli 4 Campylobacter NZ_CP011777 4 Campylobacter Campylobacter concisus 13826 4 Campylobacter Campylobacter cuniculorum DSM 23162 = LMG 24588 4 Campylobacter Campylobacter sp. MIT 97-5078 3 Campylobacter Campylobacter coli CVM N29710 3 Campylobacter Campylobacter lari RM16712 3 Campylobacter Campylobacter sputorum biovar sputorum 2 Campylobacter Campylobacter concisus 2 Campylobacter Campylobacter showae CSUNSWCD 2 Campylobacter Campylobacter jejuni 2 Campylobacter Campylobacter hyointestinalis subsp. lawsonii 2 Campylobacter Campylobacter insulaenigrae NCTC 12927 2 Campylobacter Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260 2 Campylobacter Campylobacter upsaliensis DSM 5365 2 Campylobacter Campylobacter hominis ATCC BAA-381 2 Campylobacter Campylobacter ureolyticus RIGS 9880 1 Campylobacter Campylobacter coli RM5611 1 Campylobacter Campylobacter gracilis 1 Campylobacter Campylobacter lari RM16701 1 Campylobacter Campylobacter curvus 525.92 1 Campylobacter Campylobacter peloridis LMG 23910 1 Campylobacter Campylobacter jejuni 32488 1 Campylobacter Campylobacter coli RM1875 # 38 reads uniquely mapped to Candidatus_Babela (multi-hits among diff. species in Candidatus_Babela allowed) 38 Candidatus_Babela Candidatus Babela massiliensis # 341 reads uniquely mapped to Candidatus_Methylopumilus (multi-hits among diff. species in Candidatus_Methylopumilus allowed) 192 Candidatus_Methylopumilus Candidatus Methylopumilus turicensis 149 Candidatus_Methylopumilus Candidatus Methylopumilus planktonicus # 69 reads uniquely mapped to Candidatus_Neoehrlichia (multi-hits among diff. species in Candidatus_Neoehrlichia allowed) 69 Candidatus_Neoehrlichia Candidatus Neoehrlichia lotoris str. RAC413 # 334 reads uniquely mapped to Candidatus_Paracaedibacter (multi-hits among diff. species in Candidatus_Paracaedibacter allowed) 250 Candidatus_Paracaedibacter Candidatus Paracaedibacter symbiosus 84 Candidatus_Paracaedibacter Candidatus Paracaedibacter acanthamoebae # 135 reads uniquely mapped to Candidatus_Pelagibacter (multi-hits among diff. species in Candidatus_Pelagibacter allowed) 67 Candidatus_Pelagibacter Candidatus Pelagibacter sp. IMCC9063 33 Candidatus_Pelagibacter Candidatus Pelagibacter ubique HTCC1062 15 Candidatus_Pelagibacter Candidatus Pelagibacter ubique HTCC8051 10 Candidatus_Pelagibacter Candidatus Pelagibacter ubique HIMB083 10 Candidatus_Pelagibacter Candidatus Pelagibacter sp. HTCC7211 # 29 reads uniquely mapped to Candidatus_Protochlamydia (multi-hits among diff. species in Candidatus_Protochlamydia allowed) 29 Candidatus_Protochlamydia Protochlamydia naegleriophila # 197 reads uniquely mapped to Capnocytophaga (multi-hits among diff. species in Capnocytophaga allowed) 136 Capnocytophaga Capnocytophaga gingivalis ATCC 33624 32 Capnocytophaga Capnocytophaga sp. oral taxon 338 str. F0234 11 Capnocytophaga Capnocytophaga haemolytica 6 Capnocytophaga Capnocytophaga sp. oral taxon 323 5 Capnocytophaga Capnocytophaga ochracea DSM 7271 3 Capnocytophaga Capnocytophaga cynodegmi DSM 19736 2 Capnocytophaga Capnocytophaga canimorsus Cc5 1 Capnocytophaga Capnocytophaga granulosa ATCC 51502 1 Capnocytophaga Capnocytophaga canis # 116 reads uniquely mapped to Catellicoccus (multi-hits among diff. species in Catellicoccus allowed) 116 Catellicoccus Catellicoccus marimammalium M35/04/3 # 121 reads uniquely mapped to Chryseobacterium (multi-hits among diff. species in Chryseobacterium allowed) 15 Chryseobacterium Chryseobacterium indologenes 13 Chryseobacterium Chryseobacterium sp. IHB B 10212 13 Chryseobacterium NZ_JASZ01000321 12 Chryseobacterium Chryseobacterium sp. IHB B 17019 10 Chryseobacterium Chryseobacterium halperniae 9 Chryseobacterium Chryseobacterium sp. StRB126 8 Chryseobacterium Chryseobacterium gallinarum 6 Chryseobacterium Chryseobacterium vrystaatense 5 Chryseobacterium Chryseobacterium koreense CCUG 49689 5 Chryseobacterium Chryseobacterium sp. JAH 4 Chryseobacterium Chryseobacterium caeni DSM 17710 4 Chryseobacterium Chryseobacterium piperi 3 Chryseobacterium Chryseobacterium soli 2 Chryseobacterium Chryseobacterium polytrichastri 2 Chryseobacterium Chryseobacterium formosense 2 Chryseobacterium Chryseobacterium sp. Leaf404 2 Chryseobacterium Chryseobacterium angstadtii 1 Chryseobacterium Chryseobacterium aquaticum 1 Chryseobacterium Chryseobacterium antarcticum 1 Chryseobacterium Chryseobacterium palustre DSM 21579 1 Chryseobacterium Chryseobacterium daeguense DSM 19388 1 Chryseobacterium Chryseobacterium gregarium DSM 19109 1 Chryseobacterium Chryseobacterium greenlandense # 48 reads uniquely mapped to Chthoniobacter (multi-hits among diff. species in Chthoniobacter allowed) 48 Chthoniobacter Chthoniobacter flavus Ellin428 # 358 reads uniquely mapped to Clostridium (multi-hits among diff. species in Clostridium allowed) 39 Clostridium Clostridium sulfidigenes 33 Clostridium Clostridium sp. BNL1100 23 Clostridium Clostridium phoceensis 19 Clostridium Clostridium neonatale 17 Clostridium Clostridium sp. ASF356 16 Clostridium Clostridium botulinum BKT015925 15 Clostridium Clostridium sp. KNHs214 15 Clostridium Clostridium tetani E88 13 Clostridium Clostridium sp. KNHs209 11 Clostridium Clostridium perfringens 10 Clostridium Clostridium ihumii AP5 8 Clostridium Clostridium formicaceticum 8 Clostridium Clostridium algidicarnis 8 Clostridium Clostridium botulinum 7 Clostridium Clostridium novyi NT 7 Clostridium Clostridium argentinense 7 Clostridium Clostridium tetani 12124569 6 Clostridium Clostridium saccharobutylicum 6 Clostridium Clostridium sp. M62/1 5 Clostridium Clostridium sp. KNHs205 5 Clostridium Clostridium sp. SY8519 4 Clostridium Clostridium sp. CL-6 4 Clostridium Clostridium scatologenes 4 Clostridium Clostridium sp. LF2 3 Clostridium Clostridium beijerinckii NCIMB 8052 3 Clostridium Clostridium aceticum 3 Clostridium Clostridium saccharoperbutylacetonicum 3 Clostridium Clostridium beijerinckii 3 Clostridium Clostridium homopropionicum DSM 5847 3 Clostridium Clostridium perfringens ATCC 13124 3 Clostridium Clostridium sp. ND2 3 Clostridium Clostridium estertheticum subsp. estertheticum 3 Clostridium Clostridium cellulovorans 743B 3 Clostridium Clostridium perfringens str. 13 3 Clostridium Clostridium botulinum B str. Eklund 17B (NRP) 2 Clostridium Clostridium argentinense CDC 2741 2 Clostridium Clostridium beijerinckii NRRL B-598 2 Clostridium Clostridium cylindrosporum DSM 605 2 Clostridium NZ_JMFY01000004 2 Clostridium Clostridium botulinum A2 str. Kyoto 2 Clostridium Clostridium butyricum 2 Clostridium Clostridium autoethanogenum DSM 10061 2 Clostridium Clostridium botulinum A str. Hall 2 Clostridium Clostridium sp. L2-50 1 Clostridium Clostridium botulinum H04402 065 1 Clostridium Clostridium arbusti SL206 1 Clostridium Clostridium botulinum Ba4 str. 657 1 Clostridium Clostridium botulinum F str. Langeland 1 Clostridium Clostridium sp. Ade.TY 1 Clostridium Clostridium botulinum E3 str. Alaska E43 1 Clostridium Clostridium tyrobutyricum 1 Clostridium Clostridium botulinum B1 str. Okra 1 Clostridium Clostridium carboxidivorans P7 1 Clostridium Clostridium baratii 1 Clostridium Clostridium kluyveri NBRC 12016 1 Clostridium Clostridium ljungdahlii DSM 13528 1 Clostridium Clostridium saccharobutylicum DSM 13864 1 Clostridium Clostridium botulinum A str. ATCC 19397 1 Clostridium Clostridium botulinum 202F 1 Clostridium Clostridium sporogenes 1 Clostridium Clostridium sp. mt5 # 160 reads uniquely mapped to Collinsella (multi-hits among diff. species in Collinsella allowed) 45 Collinsella Collinsella aerofaciens ATCC 25986 39 Collinsella Collinsella sp. MS5 39 Collinsella Collinsella stercoris DSM 13279 21 Collinsella Collinsella intestinalis DSM 13280 16 Collinsella Collinsella tanakaei YIT 12063 # 770 reads uniquely mapped to Comamonas (multi-hits among diff. species in Comamonas allowed) 540 Comamonas Comamonas kerstersii 58 Comamonas Comamonas testosteroni TK102 38 Comamonas Comamonas aquatica 35 Comamonas Comamonas granuli NBRC 101663 24 Comamonas Comamonas badia DSM 17552 21 Comamonas Comamonas testosteroni P19 21 Comamonas Comamonas composti DSM 21721 18 Comamonas Comamonas testosteroni CNB-2 15 Comamonas Comamonas sp. B-9 # 224 reads uniquely mapped to Conexibacter (multi-hits among diff. species in Conexibacter allowed) 116 Conexibacter Conexibacter woesei DSM 14684 108 Conexibacter Conexibacter woesei Iso977N # 927 reads uniquely mapped to Corynebacterium (multi-hits among diff. species in Corynebacterium allowed) 143 Corynebacterium Corynebacterium variabile 94 Corynebacterium Corynebacterium kroppenstedtii DSM 44385 71 Corynebacterium Corynebacterium camporealensis 42 Corynebacterium Corynebacterium sp. ATCC 6931 39 Corynebacterium Corynebacterium pseudotuberculosis 37 Corynebacterium Corynebacterium amycolatum SK46 19 Corynebacterium Corynebacterium riegelii 19 Corynebacterium Corynebacterium aurimucosum 18 Corynebacterium Corynebacterium lactis RW2-5 18 Corynebacterium Corynebacterium glutamicum 18 Corynebacterium Corynebacterium freneyi DNF00450 18 Corynebacterium Corynebacterium frankenforstense DSM 45800 17 Corynebacterium Corynebacterium imitans 17 Corynebacterium Corynebacterium simulans 15 Corynebacterium Corynebacterium efficiens YS-314 14 Corynebacterium Corynebacterium sp. NML98-0116 14 Corynebacterium Corynebacterium jeddahense 12 Corynebacterium Corynebacterium phocae 11 Corynebacterium Corynebacterium accolens ATCC 49725 10 Corynebacterium Corynebacterium xerosis NBRC 16721 10 Corynebacterium Corynebacterium urealyticum DSM 7111 10 Corynebacterium Corynebacterium aurimucosum ATCC 700975 10 Corynebacterium Corynebacterium pyruviciproducens ATCC BAA-1742 8 Corynebacterium Corynebacterium atypicum 8 Corynebacterium Corynebacterium falsenii 7 Corynebacterium Corynebacterium epidermidicanis 7 Corynebacterium Corynebacterium timonense 5401744 7 Corynebacterium Corynebacterium ulcerans 6 Corynebacterium Corynebacterium pseudodiphtheriticum DSM 44287 6 Corynebacterium Corynebacterium urealyticum DSM 7109 6 Corynebacterium Corynebacterium jeikeium K411 6 Corynebacterium Corynebacterium kutscheri 6 Corynebacterium Corynebacterium uterequi 6 Corynebacterium Corynebacterium stationis 6 Corynebacterium Corynebacterium matruchotii ATCC 14266 6 Corynebacterium Corynebacterium glyciniphilum AJ 3170 6 Corynebacterium Corynebacterium diphtheriae 5 Corynebacterium Corynebacterium diphtheriae PW8 5 Corynebacterium Corynebacterium terpenotabidum Y-11 5 Corynebacterium Corynebacterium flavescens 5 Corynebacterium Corynebacterium diphtheriae NCTC 13129 5 Corynebacterium Corynebacterium sphenisci DSM 44792 4 Corynebacterium Corynebacterium pseudotuberculosis PAT10 4 Corynebacterium Corynebacterium nuruki S6-4 4 Corynebacterium Corynebacterium testudinoris 4 Corynebacterium Corynebacterium diphtheriae C7 (beta) 4 Corynebacterium NC_017307 4 Corynebacterium Corynebacterium glutamicum K051 3 Corynebacterium Corynebacterium capitovis DSM 44611 3 Corynebacterium Corynebacterium diphtheriae INCA 402 3 Corynebacterium Corynebacterium massiliense DSM 45435 3 Corynebacterium [Brevibacterium] flavum 3 Corynebacterium Corynebacterium diphtheriae HC03 3 Corynebacterium Corynebacterium aquilae DSM 44791 3 Corynebacterium Corynebacterium argentoratense DSM 44202 3 Corynebacterium [Brevibacterium] flavum ZL-1 3 Corynebacterium Corynebacterium diphtheriae HC04 3 Corynebacterium Corynebacterium pseudotuberculosis P54B96 3 Corynebacterium Corynebacterium glucuronolyticum ATCC 51867 3 Corynebacterium Corynebacterium marinum DSM 44953 3 Corynebacterium Corynebacterium glutamicum MB001 3 Corynebacterium Corynebacterium singulare 3 Corynebacterium Corynebacterium pseudotuberculosis 1002 2 Corynebacterium Corynebacterium lipophiloflavum DSM 44291 2 Corynebacterium Corynebacterium halotolerans YIM 70093 = DSM 44683 2 Corynebacterium Corynebacterium tuscaniense DNF00037 2 Corynebacterium Corynebacterium glutamicum R 2 Corynebacterium Corynebacterium humireducens NBRC 106098 = DSM 45392 2 Corynebacterium Corynebacterium pseudotuberculosis 1/06-A 2 Corynebacterium Corynebacterium minutissimum 2 Corynebacterium Corynebacterium glutamicum ATCC 13032 2 Corynebacterium Corynebacterium vitaeruminis DSM 20294 2 Corynebacterium Corynebacterium falsenii DSM 44353 2 Corynebacterium Corynebacterium diphtheriae HC02 2 Corynebacterium Corynebacterium glutamicum SCgG1 2 Corynebacterium Corynebacterium pseudotuberculosis 42/02-A 2 Corynebacterium Corynebacterium halotolerans 2 Corynebacterium Corynebacterium resistens DSM 45100 2 Corynebacterium Corynebacterium maris DSM 45190 2 Corynebacterium Corynebacterium pseudotuberculosis 31 2 Corynebacterium Corynebacterium crudilactis 2 Corynebacterium Corynebacterium callunae DSM 20147 2 Corynebacterium Corynebacterium doosanense CAU 212 = DSM 45436 2 Corynebacterium Corynebacterium pseudotuberculosis 316 2 Corynebacterium Corynebacterium glutamicum SCgG2 1 Corynebacterium Corynebacterium ureicelerivorans 1 Corynebacterium Corynebacterium ammoniagenes DSM 20306 1 Corynebacterium Corynebacterium mustelae 1 Corynebacterium Corynebacterium caspium DSM 44850 1 Corynebacterium Corynebacterium ulcerans BR-AD22 1 Corynebacterium Corynebacterium genitalium ATCC 33030 1 Corynebacterium Corynebacterium diphtheriae CDCE 8392 1 Corynebacterium NC_018019 1 Corynebacterium Corynebacterium ulcerans 809 1 Corynebacterium Corynebacterium variabile DSM 44702 1 Corynebacterium Corynebacterium pseudotuberculosis FRC41 1 Corynebacterium Corynebacterium pseudotuberculosis 3/99-5 1 Corynebacterium Corynebacterium ammoniagenes 1 Corynebacterium Corynebacterium deserti GIMN1.010 1 Corynebacterium Corynebacterium diphtheriae 31A 1 Corynebacterium Corynebacterium casei LMG S-19264 1 Corynebacterium Corynebacterium diphtheriae 241 1 Corynebacterium Corynebacterium glutamicum ZL-6 1 Corynebacterium Corynebacterium diphtheriae VA01 1 Corynebacterium NZ_CP012022 1 Corynebacterium Corynebacterium pseudotuberculosis 267 1 Corynebacterium Corynebacterium mastitidis DSM 44356 # 49 reads uniquely mapped to Croceitalea (multi-hits among diff. species in Croceitalea allowed) 49 Croceitalea Croceitalea dokdonensis DOKDO 023 # 323 reads uniquely mapped to Cupriavidus (multi-hits among diff. species in Cupriavidus allowed) 41 Cupriavidus Cupriavidus basilensis 37 Cupriavidus Cupriavidus sp. USMAHM13 35 Cupriavidus Cupriavidus sp. USMAA1020 33 Cupriavidus Ralstonia eutropha JMP134 32 Cupriavidus Cupriavidus metallidurans CH34 30 Cupriavidus Cupriavidus gilardii CR3 28 Cupriavidus Cupriavidus sp. USMAA2-4 26 Cupriavidus Cupriavidus taiwanensis LMG 19424 24 Cupriavidus Cupriavidus necator N-1 23 Cupriavidus Cupriavidus necator 14 Cupriavidus Ralstonia eutropha H16 # 292 reads uniquely mapped to Curvibacter (multi-hits among diff. species in Curvibacter allowed) 277 Curvibacter Curvibacter sp. PAE-UM 15 Curvibacter Curvibacter lanceolatus ATCC 14669 # 511 reads uniquely mapped to Cutibacterium (multi-hits among diff. species in Cutibacterium allowed) 113 Cutibacterium [Propionibacterium] humerusii P08 77 Cutibacterium Cutibacterium acnes 66 Cutibacterium Cutibacterium avidum 60 Cutibacterium Cutibacterium granulosum DSM 20700 58 Cutibacterium Cutibacterium avidum 44067 17 Cutibacterium Propionibacterium acnes SK137 15 Cutibacterium Propionibacterium acnes TypeIA2 P.acn33 15 Cutibacterium Propionibacterium acnes 6609 15 Cutibacterium Propionibacterium acnes HL096PA1 13 Cutibacterium Propionibacterium acnes hdn-1 13 Cutibacterium Propionibacterium acnes TypeIA2 P.acn31 12 Cutibacterium Propionibacterium acnes TypeIA2 P.acn17 12 Cutibacterium Propionibacterium acnes C1 11 Cutibacterium Propionibacterium acnes 266 8 Cutibacterium Propionibacterium acnes KPA171202 6 Cutibacterium Propionibacterium acnes subsp. defendens ATCC 11828 # 238 reads uniquely mapped to Deinococcus (multi-hits among diff. species in Deinococcus allowed) 51 Deinococcus Deinococcus soli Cha et al. 2016 20 Deinococcus Deinococcus gobiensis I-0 20 Deinococcus Deinococcus misasensis DSM 22328 19 Deinococcus Deinococcus geothermalis DSM 11300 14 Deinococcus Deinococcus actinosclerus 14 Deinococcus Deinococcus puniceus 13 Deinococcus Deinococcus maricopensis DSM 21211 13 Deinococcus Deinococcus radiodurans R1 10 Deinococcus Deinococcus apachensis DSM 19763 10 Deinococcus Deinococcus ficus DSM 19119 10 Deinococcus Deinococcus marmoris DSM 12784 9 Deinococcus Deinococcus proteolyticus MRP 7 Deinococcus Deinococcus frigens DSM 12807 6 Deinococcus Deinococcus peraridilitoris DSM 19664 5 Deinococcus Deinococcus deserti VCD115 5 Deinococcus NZ_LIYN01000529 3 Deinococcus Deinococcus sp. YIM 77859 2 Deinococcus Deinococcus phoenicis 2 Deinococcus Deinococcus pimensis DSM 21231 1 Deinococcus NZ_LIYN01000006 1 Deinococcus Deinococcus murrayi DSM 11303 1 Deinococcus Deinococcus swuensis 1 Deinococcus NZ_LIYN01000003 1 Deinococcus NZ_LIYN01000546 # 532 reads uniquely mapped to Dermacoccus (multi-hits among diff. species in Dermacoccus allowed) 382 Dermacoccus Dermacoccus nishinomiyaensis 150 Dermacoccus Dermacoccus sp. PE3 # 435 reads uniquely mapped to Devosia (multi-hits among diff. species in Devosia allowed) 66 Devosia Devosia geojensis 58 Devosia Devosia insulae DS-56 49 Devosia Devosia sp. A16 48 Devosia Devosia sp. H5989 44 Devosia Devosia sp. LC5 36 Devosia Devosia soli 34 Devosia Devosia psychrophila 33 Devosia Devosia riboflavina 31 Devosia Devosia chinhatensis 16 Devosia Devosia sp. Root685 13 Devosia Devosia epidermidihirudinis 7 Devosia Devosia sp. Root436 # 1078 reads uniquely mapped to Dietzia (multi-hits among diff. species in Dietzia allowed) 493 Dietzia Dietzia sp. UCD-THP 293 Dietzia Dietzia maris 210 Dietzia Dietzia timorensis 82 Dietzia Dietzia alimentaria 72 # 94 reads uniquely mapped to Dolosigranulum (multi-hits among diff. species in Dolosigranulum allowed) 94 Dolosigranulum Dolosigranulum pigrum ATCC 51524 # 311 reads uniquely mapped to Elioraea (multi-hits among diff. species in Elioraea allowed) 311 Elioraea Elioraea tepidiphila DSM 17972 # 519 reads uniquely mapped to Enterobacter (multi-hits among diff. species in Enterobacter allowed) 118 Enterobacter Enterobacter cloacae 77 Enterobacter Enterobacter sp. 638 30 Enterobacter Enterobacter hormaechei subsp. oharae 26 Enterobacter Enterobacter asburiae 21 Enterobacter Enterobacter hormaechei subsp. steigerwaltii 21 Enterobacter Enterobacter lignolyticus SCF1 17 Enterobacter Enterobacter sp. ODB01 15 Enterobacter Enterobacter hormaechei subsp. hormaechei 15 Enterobacter Enterobacter cloacae complex 'Hoffmann cluster III' 15 Enterobacter Enterobacter cloacae subsp. cloacae ATCC 13047 13 Enterobacter Enterobacter asburiae L1 13 Enterobacter Enterobacter sp. E20 13 Enterobacter Enterobacter cloacae EcWSU1 13 Enterobacter Enterobacter sp. R4-368 12 Enterobacter Enterobacter cloacae ECNIH3 12 Enterobacter Enterobacter ludwigii 9 Enterobacter Enterobacter kobei 9 Enterobacter Enterobacter cloacae P101 9 Enterobacter Enterobacter sp. HK169 9 Enterobacter Enterobacter asburiae LF7a 8 Enterobacter Enterobacter xiangfangensis 8 Enterobacter Enterobacter cloacae complex 'Hoffmann cluster IV' 7 Enterobacter Enterobacter sp. FY-07 7 Enterobacter Enterobacter cloacae ECNIH2 7 Enterobacter Enterobacter cloacae ECR091 7 Enterobacter Enterobacter cloacae subsp. cloacae ENHKU01 6 Enterobacter Enterobacter cloacae complex sp. 35734 2 Enterobacter Enterobacter cloacae subsp. dissolvens SDM # 602 reads uniquely mapped to Escherichia (multi-hits among diff. species in Escherichia allowed) 348 Escherichia Escherichia coli 32 Escherichia Escherichia vulneris NBRC 102420 27 Escherichia Escherichia coli O157:H7 22 Escherichia Escherichia coli O139:H28 str. E24377A 19 Escherichia Escherichia coli K-12 12 Escherichia Escherichia coli str. K-12 substr. MG1655 6 Escherichia Escherichia albertii KF1 6 Escherichia Escherichia coli str. K-12 substr. W3110 6 Escherichia Escherichia coli BL21(DE3) 5 Escherichia Escherichia coli DH1 4 Escherichia Escherichia coli W 4 Escherichia Escherichia coli Nissle 1917 4 Escherichia Escherichia coli O83:H1 str. NRG 857C 3 Escherichia Escherichia coli 'BL21-Gold(DE3)pLysS AG' 3 Escherichia Escherichia albertii 3 Escherichia Escherichia coli O157 3 Escherichia NZ_CP014197 3 Escherichia Escherichia coli JJ1886 3 Escherichia Escherichia coli B 3 Escherichia Escherichia coli IAI1 3 Escherichia Escherichia coli O25b:H4-ST131 3 Escherichia Escherichia coli O157:H7 str. EDL933 3 Escherichia Escherichia coli IHE3034 3 Escherichia Escherichia coli IAI39 3 Escherichia Escherichia coli SE11 2 Escherichia Escherichia coli UMNK88 2 Escherichia Escherichia coli O55:H7 str. RM12579 2 Escherichia Escherichia coli BW2952 2 Escherichia Escherichia coli B str. REL606 2 Escherichia Escherichia coli str. K-12 substr. DH10B 2 Escherichia Escherichia coli ER2796 2 Escherichia Escherichia coli LF82 2 Escherichia NZ_CP014492 2 Escherichia Escherichia coli O157:H16 2 Escherichia Escherichia coli O145:H28 str. RM13516 2 Escherichia NZ_CP014670 2 Escherichia Escherichia coli HS 2 Escherichia Escherichia coli BW25113 2 Escherichia Escherichia coli O104:H4 str. 2011C-3493 2 Escherichia Escherichia coli str. 'clone D i2' 2 Escherichia Escherichia fergusonii ATCC 35469 2 Escherichia Escherichia coli str. K-12 substr. MDS42 2 Escherichia Escherichia coli str. Sanji 2 Escherichia Escherichia coli O104:H4 str. 2009EL-2071 2 Escherichia Escherichia coli UM146 2 Escherichia Escherichia coli JJ1887 2 Escherichia Escherichia coli O157:H7 str. SS52 2 Escherichia Escherichia coli O157:H7 str. Sakai 1 Escherichia Escherichia coli PCN061 1 Escherichia Escherichia coli O104:H4 str. C227-11 1 Escherichia Escherichia coli 042 1 Escherichia Escherichia coli O145:H28 str. RM13514 1 Escherichia Escherichia coli str. 'clone D i14' 1 Escherichia Escherichia coli O55:H7 str. CB9615 1 Escherichia Escherichia coli PCN033 1 Escherichia Escherichia coli VR50 1 Escherichia Escherichia coli O26:H11 str. 11368 1 Escherichia Escherichia coli APEC O1 1 Escherichia Escherichia coli O157:H7 str. TW14359 1 Escherichia Escherichia coli SMS-3-5 1 Escherichia Escherichia coli O103:H2 str. 12009 1 Escherichia Escherichia coli KLY 1 Escherichia Escherichia coli ECC-1470 1 Escherichia Escherichia coli O111:H- str. 11128 1 Escherichia Escherichia coli APEC O78 1 Escherichia NZ_CP018770 1 Escherichia Escherichia coli O157:H7 str. SS17 1 Escherichia Escherichia coli CFT073 1 Escherichia Escherichia coli O104:H4 str. 2009EL-2050 1 Escherichia Escherichia coli ATCC 25922 1 Escherichia Escherichia coli KO11FL 1 Escherichia Escherichia coli ETEC H10407 1 Escherichia Escherichia coli SE15 # 193 reads uniquely mapped to Exiguobacterium (multi-hits among diff. species in Exiguobacterium allowed) 58 Exiguobacterium Exiguobacterium aurantiacum DSM 6208 38 Exiguobacterium Exiguobacterium sp. AT1b 24 Exiguobacterium Exiguobacterium sibiricum 255-15 19 Exiguobacterium Exiguobacterium antarcticum B7 15 Exiguobacterium Exiguobacterium sp. ZWU0009 14 Exiguobacterium Exiguobacterium sp. MH3 8 Exiguobacterium Exiguobacterium aurantiacum 7 Exiguobacterium Exiguobacterium sp. U13-1 6 Exiguobacterium Exiguobacterium profundum 4 Exiguobacterium Exiguobacterium undae # 39 reads uniquely mapped to Fermentimonas (multi-hits among diff. species in Fermentimonas allowed) 39 Fermentimonas Fermentimonas caenicola # 128 reads uniquely mapped to Fibrella (multi-hits among diff. species in Fibrella allowed) 128 Fibrella Fibrella aestuarina BUZ 2 # 30 reads uniquely mapped to Fibrisoma (multi-hits among diff. species in Fibrisoma allowed) 30 Fibrisoma Fibrisoma limi BUZ 3 # 46 reads uniquely mapped to Fimbriimonas (multi-hits among diff. species in Fimbriimonas allowed) 46 Fimbriimonas Fimbriimonas ginsengisoli Gsoil 348 # 54 reads uniquely mapped to Finegoldia (multi-hits among diff. species in Finegoldia allowed) 54 Finegoldia Finegoldia magna ATCC 29328 # 12 reads uniquely mapped to Flavihumibacter (multi-hits among diff. species in Flavihumibacter allowed) 5 Flavihumibacter Flavihumibacter petaseus NBRC 106054 4 Flavihumibacter Flavihumibacter sp. ZG627 3 Flavihumibacter Flavihumibacter solisilvae # 155 reads uniquely mapped to Flavobacterium (multi-hits among diff. species in Flavobacterium allowed) 80 Flavobacterium Flavobacterium sp. B17 38 Flavobacterium Flavobacterium columnare 9 Flavobacterium Flavobacterium columnare ATCC 49512 4 Flavobacterium Flavobacterium crassostreae 3 Flavobacterium Flavobacterium branchiophilum FL-15 2 Flavobacterium Flavobacterium aquatile LMG 4008 2 Flavobacterium Flavobacterium psychrophilum 2 Flavobacterium Flavobacterium filum DSM 17961 2 Flavobacterium Flavobacterium indicum GPTSA100-9 = DSM 17447 2 Flavobacterium Flavobacterium psychrophilum FPG3 2 Flavobacterium Flavobacterium cauense R2A-7 2 Flavobacterium Flavobacterium psychrophilum FPG101 1 Flavobacterium Flavobacterium sp. ACAM 123 1 Flavobacterium Flavobacterium beibuense F44-8 1 Flavobacterium Flavobacterium johnsoniae 1 Flavobacterium Flavobacterium akiainvivens 1 Flavobacterium Flavobacterium frigoris PS1 1 Flavobacterium Flavobacterium enshiense DK69 1 Flavobacterium Flavobacterium succinicans LMG 10402 # 98 reads uniquely mapped to Fusobacterium (multi-hits among diff. species in Fusobacterium allowed) 10 Fusobacterium Fusobacterium hwasookii ChDC F174 9 Fusobacterium Fusobacterium perfoetens ATCC 29250 9 Fusobacterium Fusobacterium nucleatum subsp. animalis 7_1 9 Fusobacterium Fusobacterium nucleatum subsp. polymorphum 8 Fusobacterium Fusobacterium hwasookii ChDC F206 7 Fusobacterium Fusobacterium nucleatum subsp. animalis 7 Fusobacterium Fusobacterium hwasookii ChDC F300 6 Fusobacterium Fusobacterium nucleatum 5 Fusobacterium Fusobacterium nucleatum subsp. vincentii 3_1_36A2 5 Fusobacterium Fusobacterium nucleatum subsp. nucleatum ChDC F316 4 Fusobacterium Fusobacterium nucleatum subsp. nucleatum ATCC 25586 4 Fusobacterium Fusobacterium russii ATCC 25533 4 Fusobacterium Fusobacterium periodonticum 2_1_31 4 Fusobacterium Fusobacterium nucleatum subsp. vincentii 3_1_27 3 Fusobacterium Fusobacterium nucleatum subsp. animalis 4_8 3 Fusobacterium Fusobacterium ulcerans ATCC 49185 1 Fusobacterium Fusobacterium mortiferum ATCC 9817 # 152 reads uniquely mapped to Gemella (multi-hits among diff. species in Gemella allowed) 107 Gemella Gemella haemolysans ATCC 10379 34 Gemella Gemella sp. oral taxon 928 11 Gemella Gemella bergeriae ATCC 700627 # 301 reads uniquely mapped to Geminicoccus (multi-hits among diff. species in Geminicoccus allowed) 301 Geminicoccus Geminicoccus roseus DSM 18922 # 37 reads uniquely mapped to Gemmata (multi-hits among diff. species in Gemmata allowed) 37 Gemmata Gemmata obscuriglobus UQM 2246 # 670 reads uniquely mapped to Gordonia (multi-hits among diff. species in Gordonia allowed) 85 Gordonia Gordonia kroppenstedtii DSM 45133 69 Gordonia Gordonia terrae 67 Gordonia Gordonia sp. QH-11 57 Gordonia Gordonia araii NBRC 100433 56 Gordonia Gordonia sp. KTR9 51 Gordonia Gordonia polyisoprenivorans VH2 43 Gordonia Gordonia bronchialis DSM 43247 40 Gordonia Gordonia sputi NBRC 100414 26 Gordonia Gordonia shandongensis DSM 45094 25 Gordonia Gordonia amarae NBRC 15530 23 Gordonia Gordonia neofelifaecis NRRL B-59395 21 Gordonia Gordonia malaquae NBRC 108250 19 Gordonia Gordonia sihwensis NBRC 108236 15 Gordonia Gordonia amicalis NBRC 100051 = JCM 11271 13 Gordonia Gordonia desulfuricans NBRC 100010 12 Gordonia Gordonia aichiensis NBRC 108223 11 Gordonia Gordonia effusa NBRC 100432 11 Gordonia Gordonia soli NBRC 108243 10 Gordonia Gordonia paraffinivorans NBRC 108238 9 Gordonia Gordonia hirsuta DSM 44140 = NBRC 16056 7 Gordonia Gordonia rhizosphera NBRC 16068 # 410 reads uniquely mapped to Haemophilus (multi-hits among diff. species in Haemophilus allowed) 154 Haemophilus [Haemophilus] ducreyi 45 Haemophilus Haemophilus parainfluenzae T3T1 36 Haemophilus [Haemophilus] parasuis 35 Haemophilus Haemophilus influenzae 28 Haemophilus Haemophilus sputorum CCUG 13788 15 Haemophilus Haemophilus ducreyi 35000HP 14 Haemophilus Haemophilus parasuis SH0165 13 Haemophilus Haemophilus influenzae KR494 11 Haemophilus Haemophilus influenzae F3047 10 Haemophilus NC_009566 8 Haemophilus Haemophilus influenzae R2846 8 Haemophilus Haemophilus influenzae R2866 8 Haemophilus Haemophilus influenzae F3031 8 Haemophilus Haemophilus influenzae CGSHiCZ412602 7 Haemophilus Haemophilus influenzae Rd KW20 5 Haemophilus Haemophilus influenzae 10810 4 Haemophilus Haemophilus influenzae 2019 1 Haemophilus Haemophilus influenzae 86-028NP # 13 reads uniquely mapped to Haloferula (multi-hits among diff. species in Haloferula allowed) 13 Haloferula Haloferula sp. BvORR071 # 358 reads uniquely mapped to Herbaspirillum (multi-hits among diff. species in Herbaspirillum allowed) 108 Herbaspirillum Noviherbaspirillum autotrophicum 85 Herbaspirillum Herbaspirillum seropedicae 51 Herbaspirillum Herbaspirillum rubrisubalbicans M1 32 Herbaspirillum Herbaspirillum hiltneri N3 26 Herbaspirillum Herbaspirillum seropedicae SmR1 21 Herbaspirillum Herbaspirillum frisingense 13 Herbaspirillum Herbaspirillum rhizosphaerae 9 Herbaspirillum Herbaspirillum autotrophicum 8 Herbaspirillum Herbaspirillum chlorophenolicum 5 Herbaspirillum Herbaspirillum chlorophenolicum NBRC 102525 # 181 reads uniquely mapped to Hymenobacter (multi-hits among diff. species in Hymenobacter allowed) 124 Hymenobacter Hymenobacter terrenus 20 Hymenobacter Hymenobacter sp. PAMC 26554 10 Hymenobacter Hymenobacter sp. APR13 8 Hymenobacter Hymenobacter sp. IS2118 7 Hymenobacter Hymenobacter sp. DG25A 4 Hymenobacter Hymenobacter sp. DG25B 3 Hymenobacter Hymenobacter sedentarius 2 Hymenobacter Hymenobacter swuensis DY53 2 Hymenobacter Hymenobacter sp. PAMC 26628 1 Hymenobacter Hymenobacter sp. AT01-02 # 584 reads uniquely mapped to Kineococcus (multi-hits among diff. species in Kineococcus allowed) 584 Kineococcus Kineococcus radiotolerans SRS30216 = ATCC BAA-149 # 611 reads uniquely mapped to Kocuria (multi-hits among diff. species in Kocuria allowed) 121 Kocuria Kocuria palustris 106 Kocuria Kocuria kristinae 102 Kocuria Kocuria rhizophila DC2201 67 Kocuria Kocuria flava 62 Kocuria Kocuria turfanensis 54 Kocuria Kocuria polaris 39 Kocuria Kocuria sp. ZOR0020 31 Kocuria Kocuria marina 29 Kocuria Kocuria salsicia # 58 reads uniquely mapped to Lachnoanaerobaculum (multi-hits among diff. species in Lachnoanaerobaculum allowed) 56 Lachnoanaerobaculum Lachnoanaerobaculum sp. OBRC5-5 2 Lachnoanaerobaculum Lachnoanaerobaculum saburreum DSM 3986 # 467 reads uniquely mapped to Lactobacillus (multi-hits among diff. species in Lactobacillus allowed) 124 Lactobacillus Lactobacillus selangorensis 22 Lactobacillus Lactobacillus curvatus 16 Lactobacillus Lactobacillus plantarum 16 Lactobacillus Lactobacillus vaginalis DSM 5837 = ATCC 49540 13 Lactobacillus Lactobacillus gasseri ATCC 33323 = JCM 1131 12 Lactobacillus Lactobacillus hokkaidonensis JCM 18461 12 Lactobacillus Lactobacillus ruminis ATCC 27782 11 Lactobacillus Lactobacillus tucceti DSM 20183 10 Lactobacillus Lactobacillus senioris DSM 24302 = JCM 17472 10 Lactobacillus Lactobacillus floricola DSM 23037 = JCM 16512 9 Lactobacillus Lactobacillus backii 9 Lactobacillus Lactobacillus fuchuensis DSM 14340 = JCM 11249 9 Lactobacillus Lactobacillus delbrueckii subsp. bulgaricus 8 Lactobacillus Lactobacillus apis 8 Lactobacillus Lactobacillus concavus DSM 17758 7 Lactobacillus Lactobacillus plantarum subsp. plantarum 6 Lactobacillus Lactobacillus delbrueckii subsp. sunkii 6 Lactobacillus Lactobacillus dextrinicus DSM 20335 5 Lactobacillus Lactobacillus oligofermentans DSM 15707 = LMG 22743 5 Lactobacillus Lactobacillus paracasei 5 Lactobacillus Lactobacillus sharpeae JCM 1186 = DSM 20505 5 Lactobacillus Lactobacillus delbrueckii subsp. lactis 4 Lactobacillus Lactobacillus lindneri 4 Lactobacillus Lactobacillus sakei subsp. sakei 23K 4 Lactobacillus Lactobacillus reuteri I5007 4 Lactobacillus Lactobacillus rossiae DSM 15814 4 Lactobacillus Lactobacillus iners DSM 13335 4 Lactobacillus Lactobacillus mellis 3 Lactobacillus Lactobacillus rhamnosus GG 3 Lactobacillus Lactobacillus reuteri 3 Lactobacillus Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 3 Lactobacillus Lactobacillus curieae 3 Lactobacillus Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 3 Lactobacillus Lactobacillus mucosae LM1 3 Lactobacillus Lactobacillus delbrueckii subsp. delbrueckii 3 Lactobacillus Lactobacillus salivarius UCC118 2 Lactobacillus Lactobacillus paracasei subsp. paracasei JCM 8130 2 Lactobacillus Lactobacillus pobuzihii E100301 = KCTC 13174 2 Lactobacillus Lactobacillus salivarius CECT 5713 2 Lactobacillus Lactobacillus plantarum 16 2 Lactobacillus Lactobacillus reuteri TD1 2 Lactobacillus Lactobacillus casei str. Zhang 2 Lactobacillus Lactobacillus casei subsp. casei ATCC 393 2 Lactobacillus Lactobacillus casei BL23 2 Lactobacillus Lactobacillus sanfranciscensis TMW 1.1304 2 Lactobacillus Lactobacillus koreensis 2 Lactobacillus Lactobacillus salivarius 2 Lactobacillus Lactobacillus johnsonii DPC 6026 2 Lactobacillus Lactobacillus plantarum JDM1 2 Lactobacillus Lactobacillus graminis DSM 20719 2 Lactobacillus Lactobacillus delbrueckii subsp. bulgaricus ND02 2 Lactobacillus Lactobacillus rhamnosus 2 Lactobacillus Lactobacillus paracasei subsp. paracasei 8700:2 2 Lactobacillus Lactobacillus crispatus ST1 2 Lactobacillus Lactobacillus paracasei ATCC 334 2 Lactobacillus Lactobacillus fermentum 3872 2 Lactobacillus Lactobacillus harbinensis DSM 16991 1 Lactobacillus Lactobacillus plantarum DOMLa 1 Lactobacillus NZ_CP015408 1 Lactobacillus Lactobacillus thailandensis DSM 22698 = JCM 13996 1 Lactobacillus Lactobacillus saerimneri DSM 16049 1 Lactobacillus Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 Lactobacillus Lactobacillus wasatchensis 1 Lactobacillus Lactobacillus parabuchneri 1 Lactobacillus Lactobacillus alimentarius DSM 20249 1 Lactobacillus Lactobacillus aquaticus DSM 21051 1 Lactobacillus Lactobacillus hamsteri DSM 5661 = JCM 6256 1 Lactobacillus Lactobacillus rhamnosus ATCC 8530 1 Lactobacillus Lactobacillus helveticus DPC 4571 1 Lactobacillus Lactobacillus delbrueckii subsp. indicus 1 Lactobacillus Lactobacillus acetotolerans 1 Lactobacillus Lactobacillus herbarum 1 Lactobacillus Lactobacillus casei 12A 1 Lactobacillus Lactobacillus fructivorans KCTC 3543 = DSM 20203 1 Lactobacillus Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 1 Lactobacillus Lactobacillus amylolyticus DSM 11664 1 Lactobacillus Lactobacillus nasuensis JCM 17158 1 Lactobacillus Lactobacillus apinorum 1 Lactobacillus Lactobacillus oeni DSM 19972 1 Lactobacillus Lactobacillus rhamnosus LOCK908 1 Lactobacillus Lactobacillus shenzhenensis LY-73 1 Lactobacillus Lactobacillus bifermentans DSM 20003 1 Lactobacillus Lactobacillus gigeriorum DSM 23908 = CRBIP 24.85 1 Lactobacillus Lactobacillus fermentum 1 Lactobacillus Lactobacillus ceti DSM 22408 1 Lactobacillus Lactobacillus equi DSM 15833 = JCM 10991 1 Lactobacillus Lactobacillus delbrueckii subsp. bulgaricus 2038 1 Lactobacillus Lactobacillus pontis DSM 8475 1 Lactobacillus Lactobacillus sp. WiKim39 1 Lactobacillus Lactobacillus ghanensis DSM 18630 1 Lactobacillus Lactobacillus brevis KB290 1 Lactobacillus Lactobacillus crustorum 1 Lactobacillus Lactobacillus casei BD-II 1 Lactobacillus Lactobacillus equigenerosi DSM 18793 = JCM 14505 1 Lactobacillus Lactobacillus ginsenosidimutans 1 Lactobacillus Lactobacillus fermentum IFO 3956 1 Lactobacillus Lactobacillus casei W56 1 Lactobacillus Lactobacillus salivarius str. Ren 1 Lactobacillus Lactobacillus rhamnosus LOCK900 1 Lactobacillus Lactobacillus parafarraginis DSM 18390 = JCM 14109 1 Lactobacillus Lactobacillus amylolyticus 1 Lactobacillus Lactobacillus johnsonii NCC 533 1 Lactobacillus Lactobacillus johnsonii FI9785 1 Lactobacillus Lactobacillus amylovorus 1 Lactobacillus Lactobacillus johnsonii N6.2 1 Lactobacillus Lactobacillus acidipiscis # 189 reads uniquely mapped to Lactococcus (multi-hits among diff. species in Lactococcus allowed) 50 Lactococcus Lactococcus piscium MKFS47 29 Lactococcus Lactococcus lactis subsp. cremoris UC509.9 26 Lactococcus Lactococcus garvieae Lg2 15 Lactococcus Lactococcus lactis subsp. lactis 13 Lactococcus Lactococcus garvieae ATCC 49156 7 Lactococcus Lactococcus lactis subsp. lactis CV56 6 Lactococcus Lactococcus lactis subsp. lactis KLDS 4.0325 6 Lactococcus Lactococcus lactis subsp. lactis KF147 6 Lactococcus Lactococcus lactis subsp. lactis IO-1 5 Lactococcus Lactococcus lactis subsp. cremoris MG1363 5 Lactococcus Lactococcus lactis subsp. cremoris KW2 5 Lactococcus Lactococcus lactis subsp. cremoris NZ9000 4 Lactococcus Lactococcus lactis subsp. lactis NCDO 2118 4 Lactococcus Lactococcus lactis subsp. cremoris SK11 4 Lactococcus Lactococcus lactis 3 Lactococcus Lactococcus lactis subsp. lactis Il1403 1 Lactococcus Lactococcus lactis subsp. cremoris A76 # 299 reads uniquely mapped to Lautropia (multi-hits among diff. species in Lautropia allowed) 299 Lautropia Lautropia mirabilis ATCC 51599 # 531 reads uniquely mapped to Lawsonella (multi-hits among diff. species in Lawsonella allowed) 531 Lawsonella Lawsonella clevelandensis # 625 reads uniquely mapped to Leifsonia (multi-hits among diff. species in Leifsonia allowed) 400 Leifsonia Leifsonia xyli 69 Leifsonia Leifsonia xyli subsp. xyli str. CTCB07 37 Leifsonia Leifsonia aquatica ATCC 14665 27 Leifsonia Leifsonia rubra CMS 76R 22 Leifsonia Leifsonia sp. Root4 21 Leifsonia Leifsonia sp. Root1293 18 Leifsonia Leifsonia sp. Root227 13 Leifsonia Leifsonia sp. Leaf336 9 Leifsonia Leifsonia sp. Root112D2 9 Leifsonia Leifsonia xyli subsp. cynodontis DSM 46306 # 281 reads uniquely mapped to Leptothrix (multi-hits among diff. species in Leptothrix allowed) 281 Leptothrix Leptothrix cholodnii SP-6 # 69 reads uniquely mapped to Leptotrichia (multi-hits among diff. species in Leptotrichia allowed) 50 Leptotrichia Leptotrichia buccalis C-1013-b 10 Leptotrichia Leptotrichia sp. oral taxon 212 6 Leptotrichia Leptotrichia sp. oral taxon 847 2 Leptotrichia Leptotrichia goodfellowii DSM 19756 1 Leptotrichia Leptotrichia shahii DSM 19757 # 351 reads uniquely mapped to Massilia (multi-hits among diff. species in Massilia allowed) 83 Massilia Massilia timonae 70 Massilia Massilia putida 67 Massilia Massilia sp. 9096 62 Massilia Massilia sp. WG5 57 Massilia Massilia sp. NR 4-1 10 Massilia Massilia sp. Leaf139 2 Massilia Massilia niastensis DSM 21313 # 435 reads uniquely mapped to Methylobacterium (multi-hits among diff. species in Methylobacterium allowed) 75 Methylobacterium Methylobacterium sp. ZNC0032 40 Methylobacterium Methylobacterium sp. 77 40 Methylobacterium Methylobacterium aquaticum 31 Methylobacterium Methylobacterium radiotolerans JCM 2831 31 Methylobacterium Methylobacterium nodulans ORS 2060 30 Methylobacterium Methylobacterium extorquens 24 Methylobacterium Methylobacterium phyllosphaerae 20 Methylobacterium Methylobacterium sp. Leaf399 20 Methylobacterium Methylobacterium sp. Leaf99 20 Methylobacterium Methylobacterium sp. C1 19 Methylobacterium Methylobacterium sp. 4-46 13 Methylobacterium Methylobacterium extorquens DM4 12 Methylobacterium Methylobacterium populi 9 Methylobacterium Methylobacterium populi BJ001 9 Methylobacterium Methylobacterium sp. Leaf456 9 Methylobacterium Methylobacterium sp. AMS5 8 Methylobacterium Methylobacterium sp. Leaf89 8 Methylobacterium Methylobacterium extorquens PA1 6 Methylobacterium Methylobacterium extorquens CM4 6 Methylobacterium Methylobacterium sp. ARG-1 5 Methylobacterium Methylobacterium extorquens AM1 # 321 reads uniquely mapped to Methyloversatilis (multi-hits among diff. species in Methyloversatilis allowed) 128 Methyloversatilis Methyloversatilis discipulorum 72 Methyloversatilis Methyloversatilis universalis FAM5 67 Methyloversatilis Methyloversatilis sp. RAC08 54 Methyloversatilis Methyloversatilis thermotolerans # 309 reads uniquely mapped to Methylovulum (multi-hits among diff. species in Methylovulum allowed) 309 Methylovulum Methylovulum miyakonense HT12 # 535 reads uniquely mapped to Microbacterium (multi-hits among diff. species in Microbacterium allowed) 41 Microbacterium Microbacterium luticocti DSM 19459 27 Microbacterium Microbacterium gorillae 24 Microbacterium Microbacterium sp. CH12i 24 Microbacterium Microbacterium sp. PAMC 28756 23 Microbacterium Microbacterium sp. BH-3-3-3 21 Microbacterium Microbacterium gubbeenense DSM 15944 20 Microbacterium Microbacterium sp. CGR1 20 Microbacterium Microbacterium testaceum StLB037 19 Microbacterium Microbacterium foliorum 16 Microbacterium Microbacterium sp. 1.5R 16 Microbacterium Microbacterium sp. No. 7 16 Microbacterium Microbacterium aurum 15 Microbacterium Microbacterium sp. CF335 15 Microbacterium Microbacterium sp. Root53 14 Microbacterium Microbacterium sp. B19 13 Microbacterium Microbacterium sp. Root61 13 Microbacterium Microbacterium mangrovi 13 Microbacterium Microbacterium oleivorans NBRC 103075 13 Microbacterium Microbacterium sp. XT11 13 Microbacterium Microbacterium paludicola 13 Microbacterium Microbacterium indicum DSM 19969 13 Microbacterium Microbacterium sp. C448 11 Microbacterium Microbacterium ginsengisoli 11 Microbacterium Microbacterium sp. UNCCL10 10 Microbacterium Microbacterium chocolatum 9 Microbacterium Microbacterium yannicii PS01 9 Microbacterium Microbacterium maritypicum MF109 8 Microbacterium Microbacterium sp. Root166 8 Microbacterium Microbacterium hominis NBRC 15708 8 Microbacterium Microbacterium hydrocarbonoxydans 8 Microbacterium Microbacterium trichothecenolyticum 8 Microbacterium Microbacterium paraoxydans DH1b 8 Microbacterium Microbacterium sp. Root180 8 Microbacterium Microbacterium hydrocarbonoxydans NBRC 103074 7 Microbacterium Microbacterium ketosireducens 6 Microbacterium Microbacterium profundi 5 Microbacterium Microbacterium azadirachtae 5 Microbacterium Microbacterium sp. GCS4 4 Microbacterium Microbacterium oxydans # 544 reads uniquely mapped to Micrococcus (multi-hits among diff. species in Micrococcus allowed) 544 Micrococcus Micrococcus luteus NCTC 2665 # 522 reads uniquely mapped to Mobilicoccus (multi-hits among diff. species in Mobilicoccus allowed) 304 Mobilicoccus Mobilicoccus sp. SIT2 218 Mobilicoccus Mobilicoccus pelagius NBRC 104925 # 341 reads uniquely mapped to Mobiluncus (multi-hits among diff. species in Mobiluncus allowed) 211 Mobiluncus Mobiluncus mulieris ATCC 35243 130 Mobiluncus Mobiluncus curtisii ATCC 43063 # 101 reads uniquely mapped to Mogibacterium (multi-hits among diff. species in Mogibacterium allowed) 101 Mogibacterium Mogibacterium timidum ATCC 33093 # 386 reads uniquely mapped to Moraxella (multi-hits among diff. species in Moraxella allowed) 131 Moraxella Moraxella bovoculi 82 Moraxella Moraxella catarrhalis 77 Moraxella Moraxella osloensis 30 Moraxella Moraxella macacae 0408225 29 Moraxella Moraxella catarrhalis BBH18 14 Moraxella Moraxella boevrei DSM 14165 14 Moraxella Moraxella ovis 9 Moraxella Moraxella caprae DSM 19149 # 663 reads uniquely mapped to Mycobacterium (multi-hits among diff. species in Mycobacterium allowed) 24 Mycobacterium Mycobacterium smegmatis 23 Mycobacterium Mycobacterium smegmatis str. MC2 155 23 Mycobacterium Mycobacterium abscessus 20 Mycobacterium Mycobacterium abscessus subsp. abscessus 20 Mycobacterium Mycobacterium hassiacum DSM 44199 17 Mycobacterium Mycobacterium sp. UM_Kg1 17 Mycobacterium Mycobacterium gilvum Spyr1 16 Mycobacterium Mycobacterium tuberculosis 15 Mycobacterium Mycobacterium sp. KMS 15 Mycobacterium Mycobacterium bovis BCG str. Tokyo 172 14 Mycobacterium Mycobacterium sp. Root265 14 Mycobacterium Mycobacterium sp. JLS 14 Mycobacterium Mycobacterium avium subsp. paratuberculosis 13 Mycobacterium Mycobacterium abscessus subsp. bolletii 12 Mycobacterium Mycobacterium neoaurum VKM Ac-1815D 12 Mycobacterium Mycobacterium cosmeticum 12 Mycobacterium Mycobacterium gilvum PYR-GCK 12 Mycobacterium Mycobacterium sp. VKM Ac-1817D 11 Mycobacterium Mycobacterium mucogenicum 11 Mycobacterium Mycobacterium abscessus subsp. massiliense str. GO 06 11 Mycobacterium Mycobacterium sp. EPa45 10 Mycobacterium Mycobacterium immunogenum 10 Mycobacterium Mycobacterium fortuitum 8 Mycobacterium Mycobacterium obuense 8 Mycobacterium Mycobacterium simiae 8 Mycobacterium Mycobacterium rhodesiae NBB3 8 Mycobacterium Mycobacterium marinum E11 8 Mycobacterium Mycobacterium vaccae 95051 8 Mycobacterium Mycobacterium heckeshornense 8 Mycobacterium Mycobacterium chubuense NBB4 8 Mycobacterium Mycobacterium phlei 8 Mycobacterium Mycobacterium sp. GA-0227b 7 Mycobacterium Mycobacterium vanbaalenii PYR-1 7 Mycobacterium Mycobacterium gordonae 7 Mycobacterium Mycobacterium iranicum UM_TJL 7 Mycobacterium Mycobacterium aurum 7 Mycobacterium Mycobacterium leprae TN 7 Mycobacterium Mycobacterium chlorophenolicum 7 Mycobacterium Mycobacterium leprae Br4923 7 Mycobacterium Mycobacterium kansasii ATCC 12478 6 Mycobacterium Mycobacterium avium subsp. paratuberculosis K-10 6 Mycobacterium Mycobacterium sp. MCS 6 Mycobacterium Mycobacterium sp. Root135 6 Mycobacterium Mycobacterium litorale 6 Mycobacterium Mycobacterium avium subsp. hominissuis 5 Mycobacterium Mycobacterium sp. YC-RL4 5 Mycobacterium Mycobacterium sp. NRRL B-3805 5 Mycobacterium Mycobacterium goodii 5 Mycobacterium Mycobacterium triplex 5 Mycobacterium Mycobacterium thermoresistibile ATCC 19527 5 Mycobacterium Mycobacterium asiaticum DSM 44297 4 Mycobacterium Mycobacterium avium 4 Mycobacterium Mycobacterium avium subsp. avium Env 77 4 Mycobacterium Mycobacterium tuberculosis KZN 4207 4 Mycobacterium Mycobacterium parascrofulaceum ATCC BAA-614 4 Mycobacterium Mycobacterium setense 4 Mycobacterium NZ_CP020381 4 Mycobacterium Mycobacterium genavense ATCC 51234 4 Mycobacterium Mycobacterium sp. djl-10 4 Mycobacterium Mycobacterium heraklionense 4 Mycobacterium Mycobacterium arupense 4 Mycobacterium Mycobacterium sp. WY10 3 Mycobacterium Mycobacterium avium subsp. hominissuis TH135 3 Mycobacterium Mycobacterium bovis BCG str. Pasteur 1173P2 3 Mycobacterium Mycobacterium sp. 155 3 Mycobacterium Mycobacterium sinense 3 Mycobacterium Mycobacterium xenopi RIVM700367 3 Mycobacterium Mycobacterium sp. M26 3 Mycobacterium Mycobacterium haemophilum DSM 44634 3 Mycobacterium Mycobacterium septicum DSM 44393 3 Mycobacterium Mycobacterium nebraskense 3 Mycobacterium Mycobacterium mageritense DSM 44476 = CIP 104973 3 Mycobacterium Mycobacterium marinum M 2 Mycobacterium Mycobacterium kyorinense 2 Mycobacterium Mycobacterium chelonae CCUG 47445 2 Mycobacterium Mycobacterium tuberculosis EAI5/NITR206 2 Mycobacterium Mycobacterium sp. GA-1331 2 Mycobacterium Mycobacterium tuberculosis KZN 605 2 Mycobacterium Mycobacterium abscessus subsp. bolletii 50594 2 Mycobacterium Mycobacterium brisbanense 2 Mycobacterium Mycobacterium tuberculosis H37Ra 2 Mycobacterium Mycobacterium canettii CIPT 140010059 2 Mycobacterium Mycobacterium liflandii 128FXT 2 Mycobacterium Mycobacterium kansasii 824 2 Mycobacterium Mycobacterium tuberculosis str. Kurono 2 Mycobacterium Mycobacterium sp. QIA-37 2 Mycobacterium Mycobacterium sp. MOTT36Y 2 Mycobacterium Mycobacterium tuberculosis str. Beijing/NITR203 1 Mycobacterium NZ_LAWX01000020 1 Mycobacterium Mycobacterium bovis 1 Mycobacterium Mycobacterium tuberculosis 7199-99 1 Mycobacterium Mycobacterium tuberculosis str. Erdman = ATCC 35801 1 Mycobacterium NZ_CP010338 1 Mycobacterium Mycobacterium avium subsp. avium 2285 (R) 1 Mycobacterium Mycobacterium tuberculosis BT2 1 Mycobacterium Mycobacterium intracellulare ATCC 13950 1 Mycobacterium Mycobacterium bovis BCG 1 Mycobacterium Mycobacterium tuberculosis KZN 1435 1 Mycobacterium Mycobacterium chimaera 1 Mycobacterium Mycobacterium bovis BCG str. Mexico 1 Mycobacterium Mycobacterium avium 104 1 Mycobacterium Mycobacterium tuberculosis H37Rv 1 Mycobacterium Mycobacterium intracellulare 1956 1 Mycobacterium Mycobacterium yongonense 05-1390 1 Mycobacterium Mycobacterium tuberculosis HKBS1 1 Mycobacterium Mycobacterium avium subsp. avium 2285 (S) 1 Mycobacterium Mycobacterium tuberculosis K 1 Mycobacterium Mycobacterium sp. JS623 1 Mycobacterium Mycobacterium rhodesiae JS60 1 Mycobacterium Mycobacterium colombiense CECT 3035 # 561 reads uniquely mapped to Nakamurella (multi-hits among diff. species in Nakamurella allowed) 311 Nakamurella Nakamurella lactea DSM 19367 250 Nakamurella Nakamurella multipartita DSM 44233 # 296 reads uniquely mapped to Neisseria (multi-hits among diff. species in Neisseria allowed) 162 Neisseria Neisseria meningitidis 15 Neisseria Neisseria gonorrhoeae 15 Neisseria Neisseria bacilliformis ATCC BAA-1200 8 Neisseria Neisseria arctica 8 Neisseria Neisseria sicca 7 Neisseria Neisseria weaveri 6 Neisseria Neisseria elongata subsp. glycolytica ATCC 29315 6 Neisseria Neisseria meningitidis M01-240149 5 Neisseria Neisseria lactamica 020-06 5 Neisseria Neisseria meningitidis FAM18 4 Neisseria Neisseria meningitidis M04-240196 4 Neisseria Neisseria gonorrhoeae FA 1090 4 Neisseria Neisseria meningitidis Z2491 4 Neisseria Neisseria meningitidis M7124 4 Neisseria Neisseria wadsworthii 9715 4 Neisseria Neisseria meningitidis 8013 4 Neisseria Neisseria mucosa C102 3 Neisseria Neisseria meningitidis NZ-05/33 3 Neisseria Neisseria meningitidis M01-240355 3 Neisseria Neisseria meningitidis WUE 2594 3 Neisseria Neisseria meningitidis 053442 2 Neisseria Neisseria meningitidis LNP21362 2 Neisseria Neisseria meningitidis H44/76 2 Neisseria Neisseria cinerea ATCC 14685 2 Neisseria Neisseria gonorrhoeae NCCP11945 2 Neisseria Neisseria gonorrhoeae MS11 2 Neisseria Neisseria shayeganii 871 2 Neisseria Neisseria lactamica 1 Neisseria Neisseria meningitidis M0579 1 Neisseria Neisseria meningitidis alpha14 1 Neisseria Neisseria sp. 74A18 1 Neisseria Neisseria meningitidis alpha710 1 Neisseria Neisseria meningitidis MC58 # 727 reads uniquely mapped to Nesterenkonia (multi-hits among diff. species in Nesterenkonia allowed) 423 Nesterenkonia Nesterenkonia jeotgali 135 Nesterenkonia Nesterenkonia alba DSM 19423 106 Nesterenkonia Nesterenkonia massiliensis 63 Nesterenkonia Nesterenkonia sp. F # 613 reads uniquely mapped to Nocardia (multi-hits among diff. species in Nocardia allowed) 169 Nocardia Nocardia sp. 348MFTsu5.1 140 Nocardia Nocardia farcinica 82 Nocardia Nocardia seriolae 28 Nocardia Nocardia nova SH22a 25 Nocardia Nocardia soli 24 Nocardia Nocardia rhamnosiphila NBRC 108938 21 Nocardia Nocardia sp. BMG51109 20 Nocardia Nocardia asteroides NBRC 15531 19 Nocardia Nocardia carnea NBRC 14403 11 Nocardia Nocardia transvalensis NBRC 15921 9 Nocardia Nocardia niigatensis NBRC 100131 9 Nocardia Nocardia sp. BMG111209 7 Nocardia Nocardia veterana NBRC 100344 6 Nocardia Nocardia arizonensis 6 Nocardia Nocardia farcinica IFM 10152 6 Nocardia Nocardia sp. CNY236 5 Nocardia Nocardia brevicatena NBRC 12119 4 Nocardia Nocardia paucivorans NBRC 100373 4 Nocardia Nocardia cyriacigeorgica GUH-2 4 Nocardia Nocardia mikamii NBRC 108933 3 Nocardia Nocardia niwae NBRC 108934 = DSM 45340 3 Nocardia Nocardia tenerifensis NBRC 101015 2 Nocardia Nocardia otitidiscaviarum NBRC 14405 2 Nocardia Nocardia arthritidis NBRC 100137 2 Nocardia Nocardia vinacea NBRC 16497 1 Nocardia Nocardia pneumoniae NBRC 100136 1 Nocardia Nocardia jiangxiensis NBRC 101359 # 564 reads uniquely mapped to Nocardioides (multi-hits among diff. species in Nocardioides allowed) 64 Nocardioides Nocardioides sp. URHA0020 59 Nocardioides Nocardioides alkalitolerans DSM 16699 58 Nocardioides Nocardioides sp. Root682 54 Nocardioides Nocardioides luteus 52 Nocardioides Nocardioides dokdonensis FR1436 41 Nocardioides Nocardioides sp. J54 39 Nocardioides Nocardioides sp. Soil805 35 Nocardioides Nocardioides sp. Root151 24 Nocardioides Nocardioides sp. Soil797 23 Nocardioides Nocardioides sp. CF8 23 Nocardioides Nocardioides halotolerans DSM 19273 17 Nocardioides Nocardioides sp. URHA0032 14 Nocardioides Nocardioides sp. Root79 14 Nocardioides Nocardioides sp. JS614 12 Nocardioides Nocardioides sp. Soil774 11 Nocardioides Nocardioides sp. Iso805N 11 Nocardioides Nocardioides insulae DSM 17944 7 Nocardioides Nocardioides sp. Leaf307 6 Nocardioides Nocardioides sp. Root190 # 557 reads uniquely mapped to Nocardiopsis (multi-hits among diff. species in Nocardiopsis allowed) 100 Nocardiopsis Nocardiopsis alba ATCC BAA-2165 65 Nocardiopsis Nocardiopsis dassonvillei 56 Nocardiopsis Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 38 Nocardiopsis Nocardiopsis xinjiangensis YIM 90004 37 Nocardiopsis Nocardiopsis kunsanensis DSM 44524 33 Nocardiopsis Nocardiopsis alkaliphila YIM 80379 32 Nocardiopsis Nocardiopsis baichengensis YIM 90130 28 Nocardiopsis Nocardiopsis potens DSM 45234 28 Nocardiopsis Nocardiopsis sp. CNT312 28 Nocardiopsis Nocardiopsis sp. NRRL B-16309 24 Nocardiopsis Nocardiopsis chromatogenes YIM 90109 24 Nocardiopsis Nocardiopsis halotolerans DSM 44410 22 Nocardiopsis Nocardiopsis gilva YIM 90087 14 Nocardiopsis Nocardiopsis salina YIM 90010 14 Nocardiopsis Nocardiopsis ganjiahuensis DSM 45031 14 Nocardiopsis Nocardiopsis lucentensis DSM 44048 # 187 reads uniquely mapped to Novibacillus (multi-hits among diff. species in Novibacillus allowed) 187 Novibacillus Novibacillus thermophilus # 366 reads uniquely mapped to Paracoccus (multi-hits among diff. species in Paracoccus allowed) 60 Paracoccus Paracoccus sp. 228 57 Paracoccus Paracoccus aminophilus JCM 7686 54 Paracoccus Paracoccus sp. TRP 50 Paracoccus Paracoccus aminovorans 41 Paracoccus Paracoccus denitrificans PD1222 35 Paracoccus Paracoccus yeei ATCC BAA-599 20 Paracoccus Paracoccus zeaxanthinifaciens ATCC 21588 19 Paracoccus Paracoccus sphaerophysae 10 Paracoccus Paracoccus yeei 10 Paracoccus Paracoccus sanguinis 5 Paracoccus Paracoccus versutus 4 Paracoccus Paracoccus sp. J55 1 Paracoccus Paracoccus halophilus # 106 reads uniquely mapped to Pedobacter (multi-hits among diff. species in Pedobacter allowed) 43 Pedobacter Pedobacter sp. Hv1 14 Pedobacter Pedobacter oryzae DSM 19973 10 Pedobacter Pedobacter sp. PACM 27299 9 Pedobacter Pedobacter antarcticus 4BY 8 Pedobacter Pedobacter arcticus A12 6 Pedobacter Pedobacter steynii 5 Pedobacter Pedobacter cryoconitis 4 Pedobacter Pedobacter agri PB92 4 Pedobacter Pedobacter heparinus DSM 2366 3 Pedobacter Pedobacter glucosidilyticus DSM 23534 # 366 reads uniquely mapped to Pelagibacterium (multi-hits among diff. species in Pelagibacterium allowed) 366 Pelagibacterium Pelagibacterium halotolerans B2 # 187 reads uniquely mapped to Peptoniphilus (multi-hits among diff. species in Peptoniphilus allowed) 43 Peptoniphilus Peptoniphilus duerdenii ATCC BAA-1640 29 Peptoniphilus Peptoniphilus sp. ING2-D1G 29 Peptoniphilus Peptoniphilus sp. oral taxon 375 str. F0436 21 Peptoniphilus Peptoniphilus obesi ph1 15 Peptoniphilus Peptoniphilus sp. BV3C26 14 Peptoniphilus Peptoniphilus indolicus ATCC 29427 14 Peptoniphilus Peptoniphilus rhinitidis 1-13 10 Peptoniphilus Peptoniphilus sp. ChDC B134 5 Peptoniphilus Peptoniphilus timonensis JC401 3 Peptoniphilus Peptoniphilus harei ACS-146-V-Sch2b 2 Peptoniphilus Peptoniphilus lacrimalis DSM 7455 2 Peptoniphilus Peptoniphilus senegalensis JC140 # 477 reads uniquely mapped to Porphyrobacter (multi-hits among diff. species in Porphyrobacter allowed) 201 Porphyrobacter Porphyrobacter mercurialis 123 Porphyrobacter Porphyrobacter cryptus DSM 12079 92 Porphyrobacter Porphyrobacter sp. HL-46 24 Porphyrobacter Porphyrobacter neustonensis 21 Porphyrobacter Porphyrobacter sp. AAP60 9 Porphyrobacter Porphyrobacter sp. LM 6 7 Porphyrobacter Porphyrobacter sp. AAP82 # 564 reads uniquely mapped to Prevotella (multi-hits among diff. species in Prevotella allowed) 494 Prevotella Prevotella sp. S7 MS 2 9 Prevotella Prevotella sp. 10(H) 9 Prevotella Prevotella ruminicola 23 6 Prevotella Prevotella copri DSM 18205 6 Prevotella Prevotella oryzae DSM 17970 6 Prevotella Prevotella bryantii B14 5 Prevotella Prevotella bivia DSM 20514 5 Prevotella Prevotella sp. HUN102 5 Prevotella Prevotella enoeca 3 Prevotella Prevotella melaninogenica ATCC 25845 2 Prevotella Prevotella denticola F0289 2 Prevotella Prevotella sp. oral taxon 299 str. F0039 2 Prevotella Prevotella saccharolytica JCM 17484 1 Prevotella Prevotella fusca JCM 17724 1 Prevotella Prevotella sp. AGR2160 1 Prevotella Prevotella intermedia 1 Prevotella Prevotella micans DSM 21469 = JCM 16134 1 Prevotella Prevotella sp. 109 1 Prevotella Prevotella amnii DSM 23384 = JCM 14753 1 Prevotella Prevotella histicola JCM 15637 = DNF00424 1 Prevotella Prevotella marshii DSM 16973 = JCM 13450 1 Prevotella Prevotella aurantiaca JCM 15754 1 Prevotella Prevotella multisaccharivorax DSM 17128 # 420 reads uniquely mapped to Propionibacterium (multi-hits among diff. species in Propionibacterium allowed) 229 Propionibacterium Propionibacterium sp. oral taxon 193 86 Propionibacterium Propionibacterium freudenreichii subsp. shermanii 48 Propionibacterium Propionibacterium sp. oral taxon 192 str. F0372 23 Propionibacterium Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 20 Propionibacterium Propionibacterium freudenreichii subsp. freudenreichii 14 Propionibacterium Propionibacterium acidifaciens DSM 21887 # 118 reads uniquely mapped to Pseudanabaena (multi-hits among diff. species in Pseudanabaena allowed) 61 Pseudanabaena Pseudanabaena sp. PCC 7367 40 Pseudanabaena Pseudanabaena sp. PCC 6802 17 Pseudanabaena Pseudanabaena biceps PCC 7429 # 512 reads uniquely mapped to Pseudoglutamicibacter (multi-hits among diff. species in Pseudoglutamicibacter allowed) 512 Pseudoglutamicibacter Pseudoglutamicibacter albus DNF00011 # 533 reads uniquely mapped to Pseudomonas (multi-hits among diff. species in Pseudomonas allowed) 57 Pseudomonas Pseudomonas pelagia CL-AP6 30 Pseudomonas Pseudomonas aeruginosa 25 Pseudomonas Pseudomonas citronellolis 24 Pseudomonas Pseudomonas saudimassiliensis 21 Pseudomonas Pseudomonas oryzihabitans 17 Pseudomonas Pseudomonas sp. S-6-2 16 Pseudomonas Pseudomonas fluorescens 15 Pseudomonas Pseudomonas putida 14 Pseudomonas Pseudomonas psychrotolerans 14 Pseudomonas Pseudomonas cerasi 14 Pseudomonas Pseudomonas azotoformans 13 Pseudomonas Pseudomonas stutzeri 11 Pseudomonas Pseudomonas monteilii 8 Pseudomonas Pseudomonas sp. CCOS 191 7 Pseudomonas Pseudomonas entomophila L48 7 Pseudomonas Pseudomonas sp. UW4 7 Pseudomonas Pseudomonas mosselii SJ10 6 Pseudomonas Pseudomonas frederiksbergensis 6 Pseudomonas Pseudomonas fluorescens NCIMB 11764 6 Pseudomonas Pseudomonas flexibilis 5 Pseudomonas Pseudomonas alkylphenolica 5 Pseudomonas Pseudomonas putida KT2440 5 Pseudomonas Pseudomonas sp. URMO17WK12:I11 5 Pseudomonas Pseudomonas cichorii JBC1 5 Pseudomonas Pseudomonas syringae pv. syringae B728a 5 Pseudomonas Pseudomonas sp. JY-Q 5 Pseudomonas Pseudomonas sp. LPH1 4 Pseudomonas Pseudomonas chlororaphis 4 Pseudomonas Pseudomonas plecoglossicida 4 Pseudomonas Pseudomonas putida B6-2 4 Pseudomonas Pseudomonas putida BIRD-1 4 Pseudomonas Pseudomonas putida SJTE-1 4 Pseudomonas Pseudomonas parafulva 4 Pseudomonas Pseudomonas putida S13.1.2 4 Pseudomonas Pseudomonas knackmussii B13 4 Pseudomonas Pseudomonas syringae pv. actinidiae ICMP 18708 4 Pseudomonas Pseudomonas chlororaphis subsp. aurantiaca 4 Pseudomonas Pseudomonas brassicacearum 3 Pseudomonas Pseudomonas mendocina S5.2 3 Pseudomonas Pseudomonas syringae pv. actinidiae 3 Pseudomonas Pseudomonas stutzeri A1501 3 Pseudomonas Pseudomonas koreensis 3 Pseudomonas Pseudomonas aeruginosa MTB-1 3 Pseudomonas Pseudomonas monteilii SB3078 3 Pseudomonas NZ_CP008859 3 Pseudomonas Pseudomonas putida GB-1 3 Pseudomonas Pseudomonas resinovorans NBRC 106553 3 Pseudomonas Pseudomonas aeruginosa DK2 3 Pseudomonas Pseudomonas aeruginosa UCBPP-PA14 3 Pseudomonas Pseudomonas pseudoalcaligenes 3 Pseudomonas Pseudomonas putida S16 3 Pseudomonas Pseudomonas syringae pv. lapsa 2 Pseudomonas Pseudomonas alcaliphila JAB1 2 Pseudomonas NZ_CP008866 2 Pseudomonas NZ_CP008870 2 Pseudomonas NZ_CP008858 2 Pseudomonas Pseudomonas sp. StFLB209 2 Pseudomonas Pseudomonas amygdali pv. lachrymans 2 Pseudomonas Pseudomonas sp. ATCC 13867 2 Pseudomonas Pseudomonas cremoricolorata 2 Pseudomonas Pseudomonas brassicacearum subsp. brassicacearum NFM421 2 Pseudomonas Pseudomonas antarctica 2 Pseudomonas Pseudomonas fulva 12-X 2 Pseudomonas Pseudomonas sp. DR 5-09 2 Pseudomonas NZ_CP008872 2 Pseudomonas Pseudomonas syringae pv. actinidiae ICMP 9853 2 Pseudomonas Pseudomonas sp. TCU-HL1 2 Pseudomonas Pseudomonas trivialis 2 Pseudomonas Pseudomonas aeruginosa VRFPA04 2 Pseudomonas Pseudomonas taeanensis MS-3 2 Pseudomonas Pseudomonas luteola XLDN4-9 2 Pseudomonas Pseudomonas sp. CC6-YY-74 2 Pseudomonas Pseudomonas fluorescens F113 2 Pseudomonas Pseudomonas putida JB 2 Pseudomonas Pseudomonas protegens Cab57 2 Pseudomonas Pseudomonas syringae pv. syringae B301D 2 Pseudomonas Pseudomonas putida NBRC 14164 2 Pseudomonas Pseudomonas putida H8234 1 Pseudomonas Pseudomonas syringae CC1557 1 Pseudomonas Pseudomonas saudiphocaensis 1 Pseudomonas [Pseudomonas syringae] pv. tomato str. DC3000 1 Pseudomonas Pseudomonas syringae pv. actinidiae ICMP 18884 1 Pseudomonas Pseudomonas mendocina ymp 1 Pseudomonas Pseudomonas protegens CHA0 1 Pseudomonas Pseudomonas fluorescens A506 1 Pseudomonas Pseudomonas putida ND6 1 Pseudomonas NZ_CP008856 1 Pseudomonas Pseudomonas putida F1 1 Pseudomonas Pseudomonas balearica DSM 6083 1 Pseudomonas Pseudomonas aeruginosa LESB58 1 Pseudomonas Pseudomonas sp. TKP 1 Pseudomonas Pseudomonas aeruginosa PA1 1 Pseudomonas Pseudomonas aeruginosa PA1R 1 Pseudomonas Pseudomonas stutzeri DSM 4166 1 Pseudomonas Pseudomonas sp. MS586 1 Pseudomonas NZ_CP008864 1 Pseudomonas NZ_CP008869 1 Pseudomonas Pseudomonas syringae pv. syringae HS191 1 Pseudomonas Pseudomonas sp. A3(2016) 1 Pseudomonas Pseudomonas thermotolerans DSM 14292 1 Pseudomonas Pseudomonas aeruginosa PAO1 1 Pseudomonas Pseudomonas putida S12 1 Pseudomonas Pseudomonas sp. VLB120 1 Pseudomonas NZ_CP008860 1 Pseudomonas Pseudomonas massiliensis 1 Pseudomonas Pseudomonas fuscovaginae ICMP 5940 1 Pseudomonas Pseudomonas aeruginosa B136-33 1 Pseudomonas Pseudomonas sp. GR 6-02 1 Pseudomonas Pseudomonas lutea 1 Pseudomonas Pseudomonas pseudoalcaligenes CECT 5344 1 Pseudomonas Pseudomonas alcaligenes 1 Pseudomonas Pseudomonas putida HB3267 1 Pseudomonas Pseudomonas mendocina NK-01 1 Pseudomonas Pseudomonas aeruginosa M18 1 Pseudomonas Pseudomonas rhizosphaerae 1 Pseudomonas Pseudomonas protegens 1 Pseudomonas Pseudomonas sp. FGI182 1 Pseudomonas Pseudomonas fluorescens SBW25 1 Pseudomonas Pseudomonas putida W619 1 Pseudomonas Pseudomonas sp. MRSN12121 # 618 reads uniquely mapped to Pseudonocardia (multi-hits among diff. species in Pseudonocardia allowed) 107 Pseudonocardia Pseudonocardia autotrophica 98 Pseudonocardia Pseudonocardia sp. AL041005-10 92 Pseudonocardia Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224 84 Pseudonocardia Pseudonocardia dioxanivorans CB1190 71 Pseudonocardia Pseudonocardia sp. HH130630-07 69 Pseudonocardia Pseudonocardia sp. HH130629-09 30 Pseudonocardia Pseudonocardia acaciae DSM 45401 21 Pseudonocardia Pseudonocardia sp. EC080625-04 17 Pseudonocardia Pseudonocardia spinosispora DSM 44797 15 Pseudonocardia Pseudonocardia sp. EC080610-09 14 Pseudonocardia Pseudonocardia sp. EC080619-01 # 322 reads uniquely mapped to Psychrobacter (multi-hits among diff. species in Psychrobacter allowed) 75 Psychrobacter Psychrobacter sp. AntiMn-1 57 Psychrobacter Psychrobacter sp. DAB_AL43B 32 Psychrobacter Psychrobacter sp. PRwf-1 20 Psychrobacter Psychrobacter sp. P2G3 20 Psychrobacter Psychrobacter cryohalolentis K5 18 Psychrobacter Psychrobacter arcticus 273-4 17 Psychrobacter Psychrobacter alimentarius 17 Psychrobacter Psychrobacter urativorans 16 Psychrobacter Psychrobacter sp. P11G5 12 Psychrobacter Psychrobacter sp. G 11 Psychrobacter Psychrobacter sp. TB15 9 Psychrobacter Psychrobacter sp. P11F6 7 Psychrobacter Psychrobacter aquaticus CMS 56 6 Psychrobacter Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 3 Psychrobacter Psychrobacter lutiphocae DSM 21542 2 Psychrobacter Psychrobacter sp. ENNN9_III # 89 reads uniquely mapped to Pyrinomonas (multi-hits among diff. species in Pyrinomonas allowed) 89 Pyrinomonas Pyrinomonas methylaliphatogenes # 347 reads uniquely mapped to Ralstonia (multi-hits among diff. species in Ralstonia allowed) 138 Ralstonia Ralstonia solanacearum 38 Ralstonia Ralstonia insidiosa 28 Ralstonia Ralstonia mannitolilytica 28 Ralstonia Ralstonia solanacearum FJAT-1458 21 Ralstonia Ralstonia solanacearum GMI1000 21 Ralstonia Ralstonia solanacearum PSI07 17 Ralstonia Ralstonia solanacearum Po82 17 Ralstonia Ralstonia sp. PBA 16 Ralstonia Ralstonia solanacearum OE1-1 12 Ralstonia Ralstonia pickettii 12D 11 Ralstonia Ralstonia pickettii 12J # 475 reads uniquely mapped to Raoultella (multi-hits among diff. species in Raoultella allowed) 375 Raoultella Raoultella ornithinolytica 100 Raoultella Raoultella ornithinolytica B6 # 346 reads uniquely mapped to Rheinheimera (multi-hits among diff. species in Rheinheimera allowed) 143 Rheinheimera Rheinheimera sp. KL1 110 Rheinheimera Rheinheimera baltica DSM 14885 68 Rheinheimera Rheinheimera texasensis DSM 17496 23 Rheinheimera Rheinheimera perlucida DSM 18276 2 Rheinheimera Rheinheimera nanhaiensis E407-8 # 420 reads uniquely mapped to Rhizobium (multi-hits among diff. species in Rhizobium allowed) 70 Rhizobium Rhizobium phaseoli 41 Rhizobium Rhizobium sp. IRBG74 34 Rhizobium Rhizobium sp. S41 16 Rhizobium Rhizobium sp. BR10423 16 Rhizobium Rhizobium leguminosarum 16 Rhizobium Rhizobium selenitireducens ATCC BAA-1503 14 Rhizobium Rhizobium sp. NT-26 13 Rhizobium Rhizobium tropici CIAT 899 10 Rhizobium Rhizobium leguminosarum bv. trifolii WSM2304 10 Rhizobium NZ_CP016286 9 Rhizobium Rhizobium alamii 8 Rhizobium Rhizobium etli bv. mimosae str. Mim1 8 Rhizobium Rhizobium leguminosarum bv. trifolii WSM1325 8 Rhizobium Rhizobium sp. YS-1r 8 Rhizobium Rhizobium gallicum bv. gallicum R602 8 Rhizobium Rhizobium leucaenae USDA 9039 8 Rhizobium Rhizobium sp. N731 8 Rhizobium Rhizobium etli 8C-3 7 Rhizobium Rhizobium sp. N6212 7 Rhizobium Rhizobium etli CFN 42 7 Rhizobium Rhizobium gallicum 7 Rhizobium Rhizobium sp. N324 7 Rhizobium Rhizobium sp. LC145 7 Rhizobium Rhizobium etli CIAT 652 6 Rhizobium Rhizobium etli 6 Rhizobium Rhizobium sp. N871 6 Rhizobium Rhizobium sp. N113 5 Rhizobium Rhizobium giardinii bv. giardinii H152 5 Rhizobium Rhizobium sp. PDO1-076 5 Rhizobium Rhizobium leguminosarum bv. viciae 3841 5 Rhizobium Rhizobium undicola ORS 992 = ATCC 700741 4 Rhizobium Rhizobium sp. N1314 4 Rhizobium Rhizobium sp. Root651 4 Rhizobium Rhizobium etli bv. mimosae str. IE4771 4 Rhizobium Rhizobium sp. Root1212 4 Rhizobium Rhizobium sp. N1341 3 Rhizobium Rhizobium sp. N741 3 Rhizobium Rhizobium etli bv. phaseoli str. IE4803 3 Rhizobium Rhizobium leguminosarum bv. trifolii CB782 3 Rhizobium Rhizobium leguminosarum bv. trifolii WSM1689 1 Rhizobium Rhizobium mesoamericanum STM3625 1 Rhizobium Rhizobium sp. Root1334 1 Rhizobium Rhizobium sp. N621 # 653 reads uniquely mapped to Rhodococcus (multi-hits among diff. species in Rhodococcus allowed) 51 Rhodococcus Rhodococcus sp. p52 40 Rhodococcus Rhodococcus sp. 2G 33 Rhodococcus Rhodococcus pyridinivorans SB3094 32 Rhodococcus Rhodococcus opacus B4 32 Rhodococcus Rhodococcus sp. WMMA185 32 Rhodococcus Rhodococcus hoagii 103S 32 Rhodococcus Rhodococcus jostii RHA1 31 Rhodococcus Rhodococcus erythropolis R138 29 Rhodococcus Rhodococcus sp. WB1 28 Rhodococcus Rhodococcus opacus PD630 28 Rhodococcus Rhodococcus aetherivorans 27 Rhodococcus Rhodococcus sp. 008 26 Rhodococcus Rhodococcus erythropolis 23 Rhodococcus Rhodococcus sp. YL-1 23 Rhodococcus Rhodococcus rhodnii LMG 5362 23 Rhodococcus Rhodococcus erythropolis PR4 20 Rhodococcus Rhodococcus opacus 18 Rhodococcus Rhodococcus fascians D188 18 Rhodococcus Rhodococcus erythropolis CCM2595 17 Rhodococcus Rhodococcus sp. B7740 16 Rhodococcus Rhodococcus triatomae BKS 15-14 15 Rhodococcus Rhodococcus sp. PBTS 1 13 Rhodococcus Rhodococcus defluvii 12 Rhodococcus Rhodococcus sp. PBTS 2 12 Rhodococcus Rhodococcus sp. MTM3W5.2 9 Rhodococcus NZ_BBEW01000816 8 Rhodococcus Rhodococcus maanshanensis NBRC 100610 4 Rhodococcus Rhodococcus fascians A44A 1 Rhodococcus Rhodococcus sp. Leaf247 # 468 reads uniquely mapped to Rothia (multi-hits among diff. species in Rothia allowed) 319 Rothia Rothia dentocariosa ATCC 17931 67 Rothia Rothia mucilaginosa DY-18 56 Rothia Rothia mucilaginosa 26 Rothia Rothia dentocariosa # 639 reads uniquely mapped to Saccharomonospora (multi-hits among diff. species in Saccharomonospora allowed) 140 Saccharomonospora Saccharomonospora viridis DSM 43017 103 Saccharomonospora Saccharomonospora xinjiangensis XJ-54 92 Saccharomonospora Saccharomonospora saliphila YIM 90502 89 Saccharomonospora Saccharomonospora cyanea NA-134 87 Saccharomonospora Saccharomonospora paurometabolica YIM 90007 57 Saccharomonospora Saccharomonospora azurea NA-128 37 Saccharomonospora Saccharomonospora marina XMU15 21 Saccharomonospora Saccharomonospora glauca K62 13 Saccharomonospora Saccharomonospora sp. CNQ490 # 593 reads uniquely mapped to Saccharopolyspora (multi-hits among diff. species in Saccharopolyspora allowed) 474 Saccharopolyspora Saccharopolyspora erythraea NRRL 2338 84 Saccharopolyspora Saccharopolyspora spinosa NRRL 18395 35 Saccharopolyspora Saccharopolyspora rectivirgula DSM 43747 # 168 reads uniquely mapped to Salinicoccus (multi-hits among diff. species in Salinicoccus allowed) 75 Salinicoccus Salinicoccus halodurans 60 Salinicoccus Salinicoccus carnicancri Crm 24 Salinicoccus Salinicoccus luteus DSM 17002 6 Salinicoccus Salinicoccus albus DSM 19776 3 Salinicoccus Salinicoccus sp. YB14-2 # 10 reads uniquely mapped to Segetibacter (multi-hits among diff. species in Segetibacter allowed) 10 Segetibacter Segetibacter koreensis DSM 18137 # 350 reads uniquely mapped to Shinella (multi-hits among diff. species in Shinella allowed) 350 Shinella Shinella sp. HZN7 # 26 reads uniquely mapped to Singulisphaera (multi-hits among diff. species in Singulisphaera allowed) 26 Singulisphaera Singulisphaera acidiphila DSM 18658 # 42 reads uniquely mapped to Solirubrum (multi-hits among diff. species in Solirubrum allowed) 42 Solirubrum Solirubrum puertoriconensis # 290 reads uniquely mapped to Sphaerotilus (multi-hits among diff. species in Sphaerotilus allowed) 290 Sphaerotilus Sphaerotilus natans subsp. natans DSM 6575 # 1080 reads uniquely mapped to Sphingomonas (multi-hits among diff. species in Sphingomonas allowed) 237 Sphingomonas Sphingomonas sp. Leaf33 132 Sphingomonas Sphingomonas sp. Leaf339 107 Sphingomonas Sphingomonas sp. LK11 51 Sphingomonas Sphingomonas sanxanigenens DSM 19645 = NX02 39 Sphingomonas Sphingomonas wittichii RW1 37 Sphingomonas Sphingomonas taxi 35 Sphingomonas Sphingomonas panacis 29 Sphingomonas Sphingomonas melonis TY 28 Sphingomonas Sphingomonas sp. NIC1 27 Sphingomonas Sphingomonas sp. URHD0057 27 Sphingomonas Sphingomonas jaspsi DSM 18422 25 Sphingomonas Sphingomonas phyllosphaerae FA2 23 Sphingomonas Sphingomonas hengshuiensis 22 Sphingomonas Sphingomonas paucimobilis NBRC 13935 18 Sphingomonas Sphingomonas echinoides ATCC 14820 17 Sphingomonas Sphingomonas sp. LM7 17 Sphingomonas Sphingomonas sp. ERG5 16 Sphingomonas Sphingomonas sp. JJ-A5 15 Sphingomonas Sphingomonas changbaiensis NBRC 104936 14 Sphingomonas Sphingomonas wittichii 14 Sphingomonas Sphingomonas sp. MM-1 12 Sphingomonas Sphingomonas sp. Leaf412 11 Sphingomonas Sphingomonas astaxanthinifaciens DSM 22298 11 Sphingomonas Sphingomonas sp. Leaf11 11 Sphingomonas Sphingomonas sp. Root241 11 Sphingomonas Sphingomonas sp. WG 11 Sphingomonas Sphingomonas koreensis 10 Sphingomonas Sphingomonas sp. Leaf231 9 Sphingomonas Sphingomonas haloaromaticamans 9 Sphingomonas Sphingomonas sp. Mn802worker 8 Sphingomonas Sphingomonas elodea ATCC 31461 7 Sphingomonas Sphingomonas sp. Leaf34 7 Sphingomonas Sphingomonas sp. Leaf343 6 Sphingomonas Sphingomonas sp. PR090111-T3T-6A 6 Sphingomonas Sphingomonas sp. Leaf17 6 Sphingomonas Sphingomonas sp. Leaf357 5 Sphingomonas Sphingomonas sp. SRS2 4 Sphingomonas Sphingomonas sp. KC8 2 Sphingomonas Sphingomonas sp. Ag1 2 Sphingomonas Sphingomonas sp. PAMC 26617 2 Sphingomonas Sphingomonas sp. 37zxx # 554 reads uniquely mapped to Sphingopyxis (multi-hits among diff. species in Sphingopyxis allowed) 147 Sphingopyxis Sphingopyxis sp. LPB0140 65 Sphingopyxis Sphingopyxis baekryungensis DSM 16222 60 Sphingopyxis Sphingopyxis alaskensis RB2256 52 Sphingopyxis Sphingopyxis macrogoltabida 49 Sphingopyxis Sphingopyxis sp. H073 33 Sphingopyxis Sphingopyxis sp. MWB1 32 Sphingopyxis Sphingopyxis sp. Root1497 31 Sphingopyxis Sphingopyxis granuli 30 Sphingopyxis Sphingopyxis terrae NBRC 15098 21 Sphingopyxis Sphingopyxis sp. 113P3 20 Sphingopyxis Sphingopyxis sp. QXT-31 14 Sphingopyxis Sphingopyxis fribergensis # 45 reads uniquely mapped to Spirosoma (multi-hits among diff. species in Spirosoma allowed) 23 Spirosoma Spirosoma aerolatum 8 Spirosoma Spirosoma luteum DSM 19990 5 Spirosoma Spirosoma montaniterrae 4 Spirosoma Spirosoma rigui 4 Spirosoma Spirosoma radiotolerans 1 Spirosoma Spirosoma panaciterrae DSM 21099 # 201 reads uniquely mapped to Staphylococcus (multi-hits among diff. species in Staphylococcus allowed) 59 Staphylococcus Staphylococcus aureus 14 Staphylococcus Staphylococcus aureus subsp. aureus 12 Staphylococcus Staphylococcus equorum 10 Staphylococcus Staphylococcus carnosus subsp. carnosus TM300 9 Staphylococcus Staphylococcus schleiferi 7 Staphylococcus Staphylococcus hyicus 7 Staphylococcus Staphylococcus agnetis 6 Staphylococcus Staphylococcus sciuri subsp. sciuri 5 Staphylococcus Staphylococcus haemolyticus 5 Staphylococcus Staphylococcus microti 5 Staphylococcus Staphylococcus pseudintermedius 4 Staphylococcus Staphylococcus lugdunensis 4 Staphylococcus Staphylococcus aureus subsp. aureus ST228 3 Staphylococcus Staphylococcus pseudintermedius HKU10-03 3 Staphylococcus Staphylococcus epidermidis 2 Staphylococcus Staphylococcus aureus subsp. aureus Mu50 2 Staphylococcus Staphylococcus aureus subsp. aureus ECT-R 2 2 Staphylococcus Staphylococcus hominis subsp. hominis C80 2 Staphylococcus Staphylococcus sp. AntiMn-1 2 Staphylococcus Staphylococcus haemolyticus JCSC1435 2 Staphylococcus Staphylococcus aureus subsp. aureus JH9 2 Staphylococcus Staphylococcus aureus subsp. aureus MSSA476 2 Staphylococcus Staphylococcus aureus subsp. aureus CN1 2 Staphylococcus Staphylococcus aureus subsp. aureus JKD6159 2 Staphylococcus Staphylococcus xylosus 2 Staphylococcus Staphylococcus aureus USA300-ISMMS1 1 Staphylococcus Staphylococcus capitis subsp. capitis 1 Staphylococcus Staphylococcus carnosus 1 Staphylococcus Staphylococcus warneri SG1 1 Staphylococcus Staphylococcus saprophyticus 1 Staphylococcus Staphylococcus aureus Bmb9393 1 Staphylococcus Staphylococcus aureus subsp. aureus Mu3 1 Staphylococcus Staphylococcus aureus subsp. aureus SA957 1 Staphylococcus Staphylococcus aureus subsp. aureus USA300_FPR3757 1 Staphylococcus Staphylococcus argenteus 1 Staphylococcus Staphylococcus aureus subsp. aureus ED98 1 Staphylococcus Staphylococcus auricularis 1 Staphylococcus Staphylococcus aureus subsp. aureus JH1 1 Staphylococcus Staphylococcus aureus subsp. aureus Tager 104 1 Staphylococcus Staphylococcus aureus subsp. aureus VC40 1 Staphylococcus Staphylococcus pasteuri SP1 1 Staphylococcus Staphylococcus epidermidis RP62A 1 Staphylococcus Staphylococcus epidermidis PM221 1 Staphylococcus Staphylococcus pseudintermedius ED99 1 Staphylococcus Staphylococcus succinus 1 Staphylococcus Staphylococcus aureus subsp. aureus ST398 1 Staphylococcus Staphylococcus aureus subsp. aureus 6850 1 Staphylococcus Staphylococcus vitulinus F1028 1 Staphylococcus Staphylococcus aureus subsp. aureus SA268 1 Staphylococcus Staphylococcus epidermidis ATCC 12228 1 Staphylococcus Staphylococcus aureus subsp. aureus ED133 1 Staphylococcus Staphylococcus condimenti # 331 reads uniquely mapped to Starkeya (multi-hits among diff. species in Starkeya allowed) 331 Starkeya Starkeya novella DSM 506 # 389 reads uniquely mapped to Stenotrophomonas (multi-hits among diff. species in Stenotrophomonas allowed) 114 Stenotrophomonas Stenotrophomonas maltophilia 43 Stenotrophomonas Stenotrophomonas panacihumi 40 Stenotrophomonas Stenotrophomonas sp. KCTC 12332 32 Stenotrophomonas Stenotrophomonas rhizophila 27 Stenotrophomonas Stenotrophomonas sp. LM091 25 Stenotrophomonas Stenotrophomonas maltophilia JV3 22 Stenotrophomonas Stenotrophomonas maltophilia R551-3 21 Stenotrophomonas Stenotrophomonas maltophilia K279a 18 Stenotrophomonas Stenotrophomonas maltophilia D457 17 Stenotrophomonas Stenotrophomonas acidaminiphila 16 Stenotrophomonas Stenotrophomonas nitritireducens 4 Stenotrophomonas Stenotrophomonas chelatiphaga 4 Stenotrophomonas Stenotrophomonas koreensis 4 Stenotrophomonas Stenotrophomonas ginsengisoli 2 Stenotrophomonas Stenotrophomonas daejeonensis # 244 reads uniquely mapped to Steroidobacter (multi-hits among diff. species in Steroidobacter allowed) 244 Steroidobacter Steroidobacter denitrificans # 30 reads uniquely mapped to Stomatobaculum (multi-hits among diff. species in Stomatobaculum allowed) 30 Stomatobaculum Stomatobaculum longum # 278 reads uniquely mapped to Streptococcus (multi-hits among diff. species in Streptococcus allowed) 26 Streptococcus Streptococcus thermophilus 17 Streptococcus Streptococcus ratti FA-1 = DSM 20564 16 Streptococcus Streptococcus pyogenes 12 Streptococcus Streptococcus salivarius 7 Streptococcus Streptococcus macacae NCTC 11558 7 Streptococcus Streptococcus pantholopis 7 Streptococcus Streptococcus pneumoniae 6 Streptococcus Streptococcus sp. X13SY08 6 Streptococcus Streptococcus suis 5 Streptococcus Streptococcus pneumoniae SPN034183 5 Streptococcus Streptococcus mutans GS-5 5 Streptococcus Streptococcus mutans 5 Streptococcus Streptococcus oralis Uo5 5 Streptococcus Streptococcus halotolerans 5 Streptococcus Streptococcus pseudopneumoniae IS7493 4 Streptococcus Streptococcus gordonii 4 Streptococcus Streptococcus sp. oral taxon 431 4 Streptococcus Streptococcus pneumoniae AP200 4 Streptococcus Streptococcus pneumoniae ATCC 700669 4 Streptococcus Streptococcus pneumoniae Hungary19A-6 4 Streptococcus Streptococcus mutans UA159-FR 4 Streptococcus Streptococcus mitis 3 Streptococcus Streptococcus pyogenes MGAS2096 3 Streptococcus Streptococcus gallolyticus 3 Streptococcus Streptococcus pneumoniae INV104 3 Streptococcus Streptococcus pneumoniae JJA 3 Streptococcus Streptococcus parauberis KCTC 11537 3 Streptococcus Streptococcus pneumoniae SPNA45 3 Streptococcus Streptococcus oralis 3 Streptococcus Streptococcus dysgalactiae subsp. equisimilis AC-2713 2 Streptococcus Streptococcus cristatus AS 1.3089 2 Streptococcus Streptococcus equi subsp. equi 4047 2 Streptococcus Streptococcus oralis subsp. tigurinus AZ_3a 2 Streptococcus Streptococcus pneumoniae SPN032672 2 Streptococcus Streptococcus pyogenes MGAS5005 2 Streptococcus Streptococcus pneumoniae 70585 2 Streptococcus Streptococcus iniae 2 Streptococcus Streptococcus pneumoniae gamPNI0373 2 Streptococcus Streptococcus equi subsp. zooepidemicus MGCS10565 2 Streptococcus Streptococcus pneumoniae D39 2 Streptococcus Streptococcus mutans UA159 2 Streptococcus Streptococcus pneumoniae SPN994039 2 Streptococcus Streptococcus marmotae 2 Streptococcus Streptococcus gordonii str. Challis substr. CH1 2 Streptococcus Streptococcus pyogenes NZ131 2 Streptococcus Streptococcus plurextorum DSM 22810 2 Streptococcus Streptococcus pneumoniae SPN994038 2 Streptococcus Streptococcus thermophilus MN-ZLW-002 2 Streptococcus Streptococcus anginosus C1051 2 Streptococcus Streptococcus mutans NN2025 2 Streptococcus Streptococcus pneumoniae OXC141 2 Streptococcus Streptococcus pneumoniae R6 2 Streptococcus Streptococcus criceti HS-6 2 Streptococcus Streptococcus porci DSM 23759 2 Streptococcus Streptococcus constellatus subsp. pharyngis C1050 2 Streptococcus Streptococcus pneumoniae G54 2 Streptococcus Streptococcus thermophilus CNRZ1066 2 Streptococcus Streptococcus thermophilus JIM 8232 1 Streptococcus Streptococcus sanguinis SK36 1 Streptococcus Streptococcus pneumoniae TCH8431/19A 1 Streptococcus Streptococcus pyogenes MGAS8232 1 Streptococcus Streptococcus agalactiae NEM316 1 Streptococcus Streptococcus pyogenes M1 GAS 1 Streptococcus Streptococcus anginosus 1 Streptococcus Streptococcus sp. I-P16 1 Streptococcus Streptococcus merionis DSM 19192 1 Streptococcus Streptococcus intermedius B196 1 Streptococcus Streptococcus pyogenes Alab49 1 Streptococcus Streptococcus sp. FDAARGOS_192 1 Streptococcus Streptococcus macedonicus ACA-DC 198 1 Streptococcus Streptococcus thermophilus ASCC 1275 1 Streptococcus Streptococcus pyogenes JRS4 1 Streptococcus Streptococcus pneumoniae P1031 1 Streptococcus Streptococcus salivarius JIM8777 1 Streptococcus Streptococcus pyogenes A20 1 Streptococcus Streptococcus marimammalium DSM 18627 1 Streptococcus Streptococcus pneumoniae SPN033038 1 Streptococcus Streptococcus pyogenes MGAS10750 1 Streptococcus Streptococcus himalayensis 1 Streptococcus Streptococcus pneumoniae SPN034156 1 Streptococcus Streptococcus pseudoporcinus LQ 940-04 1 Streptococcus Streptococcus thermophilus LMD-9 1 Streptococcus Streptococcus constellatus subsp. pharyngis C818 1 Streptococcus Streptococcus massiliensis DSM 18628 1 Streptococcus Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 1 Streptococcus Streptococcus pneumoniae ST556 1 Streptococcus Streptococcus agalactiae 1 Streptococcus Streptococcus pyogenes M1 476 1 Streptococcus Streptococcus agalactiae CNCTC 10/84 1 Streptococcus Streptococcus dysgalactiae subsp. equisimilis RE378 1 Streptococcus Streptococcus pyogenes MGAS15252 1 Streptococcus Streptococcus constellatus subsp. pharyngis C232 1 Streptococcus Streptococcus didelphis DSM 15616 1 Streptococcus Streptococcus pyogenes HSC5 # 665 reads uniquely mapped to Streptomyces (multi-hits among diff. species in Streptomyces allowed) 141 Streptomyces Streptomyces specialis 45 Streptomyces Streptomyces xiamenensis 40 Streptomyces Streptomyces scabrisporus DSM 41855 29 Streptomyces Streptomyces sp. TAA204 21 Streptomyces Streptomyces sp. WMMB 714 19 Streptomyces Streptomyces viridifaciens 18 Streptomyces Streptomyces sp. MJM8645 14 Streptomyces Streptomyces sp. CdTB01 13 Streptomyces Streptomyces avicenniae 11 Streptomyces Streptomyces albus 11 Streptomyces Streptomyces lydicus 9 Streptomyces Streptomyces sp. SBT349 9 Streptomyces Streptomyces pactum 8 Streptomyces Streptomyces sampsonii 7 Streptomyces Streptomyces turgidiscabies Car8 7 Streptomyces Streptomyces ambofaciens 7 Streptomyces Streptomyces sp. CNQ-509 7 Streptomyces Streptomyces sp. Tue 6075 6 Streptomyces Streptomyces bingchenggensis BCW-1 6 Streptomyces Streptomyces silaceus 6 Streptomyces Streptomyces autolyticus 6 Streptomyces Streptomyces cattleya NRRL 8057 = DSM 46488 6 Streptomyces Streptomyces sp. TN58 6 Streptomyces Streptomyces lincolnensis 6 Streptomyces Streptomyces qinglanensis 6 Streptomyces Streptomyces sp. 4F 6 Streptomyces Streptomyces albulus 6 Streptomyces Streptomyces vitaminophilus DSM 41686 5 Streptomyces Streptomyces venezuelae 5 Streptomyces Streptomyces collinus Tu 365 5 Streptomyces Streptomyces roseochromogenus subsp. oscitans DS 12.976 5 Streptomyces Streptomyces yeochonensis CN732 5 Streptomyces Streptomyces avermitilis MA-4680 = NBRC 14893 4 Streptomyces Streptomyces puniciscabiei 4 Streptomyces Streptomyces cyaneogriseus subsp. noncyanogenus 4 Streptomyces Streptomyces griseus subsp. griseus NBRC 13350 4 Streptomyces Streptomyces clavuligerus 4 Streptomyces Streptomyces globisporus C-1027 4 Streptomyces Streptomyces sp. CFMR 7 4 Streptomyces Streptomyces rubrolavendulae 4 Streptomyces Streptomyces nodosus 4 Streptomyces Streptomyces sp. fd1-xmd 4 Streptomyces Streptomyces leeuwenhoekii 4 Streptomyces Streptomyces clavuligerus ATCC 27064 3 Streptomyces Streptomyces sp. RTd22 3 Streptomyces Streptomyces pristinaespiralis 3 Streptomyces Streptomyces hygroscopicus subsp. jinggangensis 5008 3 Streptomyces Streptomyces sp. 3211 3 Streptomyces Streptomyces niveus NCIMB 11891 3 Streptomyces Streptomyces hygroscopicus subsp. limoneus 3 Streptomyces Streptomyces reticuli 3 Streptomyces Streptomyces sp. CCM_MD2014 3 Streptomyces Streptomyces hygroscopicus 3 Streptomyces Streptomyces vietnamensis 3 Streptomyces Streptomyces griseoplanus 3 Streptomyces Streptomyces albus J1074 3 Streptomyces Streptomyces noursei ATCC 11455 3 Streptomyces Streptomyces niveus 3 Streptomyces Streptomyces griseochromogenes 3 Streptomyces Streptomyces coelicolor A3(2) 2 Streptomyces Streptomyces sp. S10(2016) 2 Streptomyces Streptomyces alboflavus 2 Streptomyces Streptomyces yerevanensis 2 Streptomyces Streptomyces lividans TK24 2 Streptomyces Streptomyces subrutilus 2 Streptomyces Streptomyces davawensis JCM 4913 2 Streptomyces Streptomyces parvulus 2 Streptomyces Streptomyces scabiei 87.22 2 Streptomyces Streptomyces atroolivaceus 2 Streptomyces Streptomyces albulus ZPM 2 Streptomyces Streptomyces violaceusniger Tu 4113 2 Streptomyces Streptomyces sp. SirexAA-E 2 Streptomyces Streptomyces sp. LaPpAH-95 2 Streptomyces Streptomyces sp. Tu6071 2 Streptomyces Streptomyces griseofuscus 2 Streptomyces Streptomyces sp. SAT1 2 Streptomyces Streptomyces caatingaensis 2 Streptomyces Streptomyces ipomoeae 91-03 2 Streptomyces Streptomyces glaucescens 2 Streptomyces Streptomyces iranensis 2 Streptomyces Streptomyces griseoaurantiacus M045 1 Streptomyces Streptomyces hirsutus 1 Streptomyces Streptomyces kanamyceticus 1 Streptomyces Streptomyces sp. FR-008 1 Streptomyces Streptomyces venezuelae ATCC 10712 1 Streptomyces Streptomyces sp. PAMC 26508 1 Streptomyces Streptomyces curacoi 1 Streptomyces Streptomyces flavidovirens DSM 40150 1 Streptomyces Streptomyces fulvissimus DSM 40593 1 Streptomyces Streptomyces sp. BoleA5 1 Streptomyces Streptomyces resistomycificus 1 Streptomyces Streptomyces purpeofuscus 1 Streptomyces Streptomyces pratensis ATCC 33331 1 Streptomyces Streptomyces sp. WM6378 1 Streptomyces Streptomyces sp. NRRL F-5126 1 Streptomyces Streptomyces sp. Mg1 1 Streptomyces Streptomyces sp. NRRL B-24484 1 Streptomyces Streptomyces pathocidini 1 Streptomyces Streptomyces cellulosae 1 Streptomyces Streptomyces ciscaucasicus 1 Streptomyces Streptomyces acidiscabies 84-104 1 Streptomyces Streptomyces sp. CNH287 1 Streptomyces Streptomyces sp. NRRL S-87 1 Streptomyces Streptomyces hygroscopicus subsp. jinggangensis TL01 1 Streptomyces Streptomyces ghanaensis ATCC 14672 1 Streptomyces Streptomyces megasporus 1 Streptomyces Streptomyces violens 1 Streptomyces Streptomyces natalensis ATCC 27448 1 Streptomyces Streptomyces sp. 769 1 Streptomyces Streptomyces albidoflavus 1 Streptomyces Streptomyces ambofaciens ATCC 23877 # 48 reads uniquely mapped to Tenacibaculum (multi-hits among diff. species in Tenacibaculum allowed) 25 Tenacibaculum Tenacibaculum dicentrarchi 12 Tenacibaculum Tenacibaculum sp. LPB0136 5 Tenacibaculum Tenacibaculum mesophilum 5 Tenacibaculum Tenacibaculum ovolyticum DSM 18103 1 Tenacibaculum Tenacibaculum maritimum NBRC 15946 # 146 reads uniquely mapped to Thermus (multi-hits among diff. species in Thermus allowed) 40 Thermus Thermus thermophilus SG0.5JP17-16 14 Thermus Thermus antranikianii DSM 12462 13 Thermus Thermus filiformis 12 Thermus Thermus caliditerrae 12 Thermus Thermus sp. CCB_US3_UF1 11 Thermus Thermus oshimai JL-2 7 Thermus Thermus aquaticus Y51MC23 6 Thermus Thermus scotoductus SA-01 6 Thermus Thermus islandicus DSM 21543 5 Thermus Thermus amyloliquefaciens 5 Thermus Thermus igniterrae ATCC 700962 4 Thermus Thermus brockianus 4 Thermus Thermus thermophilus HB27 4 Thermus Thermus thermophilus HB8 2 Thermus Thermus parvatiensis 1 Thermus Thermus thermophilus JL-18 # 437 reads uniquely mapped to Thiothrix (multi-hits among diff. species in Thiothrix allowed) 178 Thiothrix Thiothrix lacustris DSM 21227 136 Thiothrix Thiothrix disciformis DSM 14473 65 Thiothrix Thiothrix nivea DSM 5205 58 Thiothrix Thiothrix flexilis DSM 14609 # 576 reads uniquely mapped to Tomitella (multi-hits among diff. species in Tomitella allowed) 576 Tomitella Tomitella biformata AHU 1821 # 144 reads uniquely mapped to Vulgatibacter (multi-hits among diff. species in Vulgatibacter allowed) 144 Vulgatibacter Vulgatibacter incomptus # 1 reads uniquely mapped to Zavarzinella (multi-hits among diff. species in Zavarzinella allowed) 1 Zavarzinella Zavarzinella formosa DSM 19928 # 432 reads uniquely mapped to Zymomonas (multi-hits among diff. species in Zymomonas allowed) 345 Zymomonas Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 46 Zymomonas Zymomonas mobilis subsp. pomaceae ATCC 29192 15 Zymomonas Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 9 Zymomonas Zymomonas mobilis subsp. mobilis NRRL B-12526 8 Zymomonas Zymomonas mobilis subsp. mobilis NCIMB 11163 6 Zymomonas Zymomonas mobilis subsp. mobilis ATCC 29191 3 Zymomonas Zymomonas mobilis subsp. mobilis ATCC 10988