# 2020/10/23 00:29:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR062572	Replication ID
# SRP000542	Sample ID
# SRR062572_1.filt	Read1
# SRR062572_2.filt	Read2
R1	       21741940 (100.0000%)	[A] Total raw reads
R1	       20913686 (96.1905%)	[B] Total reads after QC of (A)
R1		
R1	       20913686 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       37885506 (90.5759%)	[B-3] Total mapped reads of (B-2)x2
R1	        3941866 (9.4241%)	[B-4] Total unmapped reads of (B-2)x2
R1	       18997002 (90.8353%)	[F] Total mapped reads of (B-2)
R1	        1916684 (9.1647%)	[G] Total unmapped reads of (B-2)
R1	         225232 (1.0770%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       20688454 (98.9230%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          13827 (0.0661%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       668.344	[I-3] RPMH of (I-1)
R1	       661.146	[I-4] PPM of (I-1)
R1	     61390.033	[I-5] RPMU of (I-1)
R1	              7 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.338	[I-7] RPMH of (I-6)
R1	         0.335	[I-8] PPM of (I-6)
R1	        31.079	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       21741940 (100.0000%)	[A] Total raw reads
R2	       20913686 (96.1905%)	[B] Total reads after QC of (A)
R2		
R2	       20913686 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       37885506 (90.5759%)	[B-3] Total mapped reads of (B-2)x2
R2	        3941866 (9.4241%)	[B-4] Total unmapped reads of (B-2)x2
R2	       18888504 (90.3165%)	[F] Total mapped reads of (B-2)
R2	        2025182 (9.6835%)	[G] Total unmapped reads of (B-2)
R2	         235808 (1.1275%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       20677878 (98.8725%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          13721 (0.0656%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       663.559	[I-3] RPMH of (I-1)
R2	       656.078	[I-4] PPM of (I-1)
R2	     58187.169	[I-5] RPMU of (I-1)
R2	              7 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.338	[I-7] RPMH of (I-6)
R2	         0.335	[I-8] PPM of (I-6)
R2	        29.685	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.1956	1.1828	109.8245	26	2	24	24.736	1976	ALL_R1	bacteria	Alcanivorax	4.89e-16
<<
666.1687	658.9943	61190.2394	13782	0	13782	13782.000	1215827	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.2172	1.2035	106.7351	46	33	13	25.169	3594	ALL_R2	bacteria	Alcanivorax	9.18e-05
<<
660.3192	652.8739	57903.0398	13654	0	13654	13654.000	1201799	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.2900	0.2869	26.6392	6	0	6	6.000	504	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2902	0.2869	25.4444	6	0	6	6.000	520	R2U	viral	Lymphocryptovirus	n/a