# 2020/10/25 06:22:35
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR239497	Replication ID
# SRP000542	Sample ID
# ERR239497_1.filt	Read1
# ERR239497_2.filt	Read2
R1	        8798634 (100.0000%)	[A] Total raw reads
R1	        8649177 (98.3014%)	[B] Total reads after QC of (A)
R1		
R1	        8649177 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       16046389 (92.7625%)	[B-3] Total mapped reads of (B-2)x2
R1	        1251965 (7.2375%)	[B-4] Total unmapped reads of (B-2)x2
R1	        8062309 (93.2148%)	[F] Total mapped reads of (B-2)
R1	         586868 (6.7852%)	[G] Total unmapped reads of (B-2)
R1	          61042 (0.7058%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        8588135 (99.2942%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           7455 (0.0862%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       868.058	[I-3] RPMH of (I-1)
R1	       861.932	[I-4] PPM of (I-1)
R1	    122129.026	[I-5] RPMU of (I-1)
R1	             12 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.397	[I-7] RPMH of (I-6)
R1	         1.387	[I-8] PPM of (I-6)
R1	       196.586	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        8798634 (100.0000%)	[A] Total raw reads
R2	        8649177 (98.3014%)	[B] Total reads after QC of (A)
R2		
R2	        8649177 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       16046389 (92.7625%)	[B-3] Total mapped reads of (B-2)x2
R2	        1251965 (7.2375%)	[B-4] Total unmapped reads of (B-2)x2
R2	        7984080 (92.3103%)	[F] Total mapped reads of (B-2)
R2	         665097 (7.6897%)	[G] Total unmapped reads of (B-2)
R2	          92599 (1.0706%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        8556578 (98.9294%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           7358 (0.0851%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       859.923	[I-3] RPMH of (I-1)
R2	       850.717	[I-4] PPM of (I-1)
R2	     79460.901	[I-5] RPMU of (I-1)
R2	              8 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.935	[I-7] RPMH of (I-6)
R2	         0.925	[I-8] PPM of (I-6)
R2	        86.394	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
867.3594	861.2380	122030.7329	7449	0	7449	7449.000	742795	ALL_R1	viral	Lymphocryptovirus	0.0
<<
859.2220	850.0231	79396.1058	7352	0	7352	7352.000	733148	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.2808	1.2718	180.2038	11	0	11	11.000	1099	R1U	viral	Lymphocryptovirus	n/a	
<<
0.1169	0.1156	10.7993	1	0	1	1.000	98	R2U	bacteria	Alcanivorax	n/a	
0.1169	0.1156	10.7993	1	0	1	1.000	96	R2U	bacteria	Roseburia	n/a	
<<
0.5843	0.5781	53.9963	5	0	5	5.000	497	R2U	viral	Lymphocryptovirus	n/a	
0.1169	0.1156	10.7993	1	0	1	1.000	99	R2U	viral	Phix174microvirus	n/a