# 2020/10/25 03:00:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR239440	Replication ID
# SRP000542	Sample ID
# ERR239440_1.filt	Read1
# ERR239440_2.filt	Read2
R1	        8222211 (100.0000%)	[A] Total raw reads
R1	        8073342 (98.1894%)	[B] Total reads after QC of (A)
R1		
R1	        8073342 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       14973386 (92.7335%)	[B-3] Total mapped reads of (B-2)x2
R1	        1173298 (7.2665%)	[B-4] Total unmapped reads of (B-2)x2
R1	        7521211 (93.1611%)	[F] Total mapped reads of (B-2)
R1	         552131 (6.8389%)	[G] Total unmapped reads of (B-2)
R1	          56673 (0.7020%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        8016669 (99.2980%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           7087 (0.0878%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       884.033	[I-3] RPMH of (I-1)
R1	       877.827	[I-4] PPM of (I-1)
R1	    125050.730	[I-5] RPMU of (I-1)
R1	              7 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.873	[I-7] RPMH of (I-6)
R1	         0.867	[I-8] PPM of (I-6)
R1	       123.516	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        8222211 (100.0000%)	[A] Total raw reads
R2	        8073342 (98.1894%)	[B] Total reads after QC of (A)
R2		
R2	        8073342 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       14973386 (92.7335%)	[B-3] Total mapped reads of (B-2)x2
R2	        1173298 (7.2665%)	[B-4] Total unmapped reads of (B-2)x2
R2	        7452175 (92.3059%)	[F] Total mapped reads of (B-2)
R2	         621167 (7.6941%)	[G] Total unmapped reads of (B-2)
R2	          85421 (1.0581%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        7987921 (98.9419%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           6970 (0.0863%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       872.568	[I-3] RPMH of (I-1)
R2	       863.335	[I-4] PPM of (I-1)
R2	     81595.861	[I-5] RPMU of (I-1)
R2	              7 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.876	[I-7] RPMH of (I-6)
R2	         0.867	[I-8] PPM of (I-6)
R2	        81.947	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
882.4114	876.2171	124821.3435	7074	0	7074	7074.000	704837	ALL_R1	viral	Lymphocryptovirus	0.0
<<
871.3156	862.0965	81478.7933	6960	0	6960	6960.000	693544	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.8732	0.8671	123.5156	7	0	7	7.000	699	R1U	viral	Lymphocryptovirus	n/a	
<<
0.8763	0.8671	81.9471	7	0	7	7.000	700	R2U	viral	Lymphocryptovirus	n/a