# 2020/10/21 15:27:06
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244340	Replication ID
# SRP000540	Sample ID
# ERR244340_1.filt	Read1
# ERR244340_2.filt	Read2
R1	        3690938 (100.0000%)	[A] Total raw reads
R1	        3629409 (98.3330%)	[B] Total reads after QC of (A)
R1		
R1	        3629409 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        6693967 (92.2184%)	[B-3] Total mapped reads of (B-2)x2
R1	         564851 (7.7816%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3371754 (92.9009%)	[F] Total mapped reads of (B-2)
R1	         257655 (7.0991%)	[G] Total unmapped reads of (B-2)
R1	          24244 (0.6680%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3605165 (99.3320%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           4493 (0.1238%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1246.267	[I-3] RPMH of (I-1)
R1	      1237.943	[I-4] PPM of (I-1)
R1	    185324.204	[I-5] RPMU of (I-1)
R1	              3 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.832	[I-7] RPMH of (I-6)
R1	         0.827	[I-8] PPM of (I-6)
R1	       123.742	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        3690938 (100.0000%)	[A] Total raw reads
R2	        3629409 (98.3330%)	[B] Total reads after QC of (A)
R2		
R2	        3629409 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        6693967 (92.2184%)	[B-3] Total mapped reads of (B-2)x2
R2	         564851 (7.7816%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3322213 (91.5359%)	[F] Total mapped reads of (B-2)
R2	         307196 (8.4641%)	[G] Total unmapped reads of (B-2)
R2	          43645 (1.2025%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3585764 (98.7975%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           4398 (0.1212%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1226.517	[I-3] RPMH of (I-1)
R2	      1211.767	[I-4] PPM of (I-1)
R2	    100767.556	[I-5] RPMU of (I-1)
R2	              6 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.673	[I-7] RPMH of (I-6)
R2	         1.653	[I-8] PPM of (I-6)
R2	       137.473	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1245.7127	1237.3915	185241.7093	4491	0	4491	4491.000	447772	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1226.2380	1211.4920	100744.6443	4397	0	4397	4397.000	438039	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.5548	0.5511	82.4946	2	0	2	2.000	200	R1U	viral	Lymphocryptovirus	n/a	
0.2774	0.2755	41.2473	1	0	1	1.000	99	R1U	viral	Phix174microvirus	n/a	
<<
1.6733	1.6532	137.4728	6	0	6	6.000	598	R2U	viral	Lymphocryptovirus	n/a