# 2020/10/21 11:23:37
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244278	Replication ID
# SRP000540	Sample ID
# ERR244278_1.filt	Read1
# ERR244278_2.filt	Read2
R1	        3676310 (100.0000%)	[A] Total raw reads
R1	        3615732 (98.3522%)	[B] Total reads after QC of (A)
R1		
R1	        3615732 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        6658536 (92.0773%)	[B-3] Total mapped reads of (B-2)x2
R1	         572928 (7.9227%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3353026 (92.7344%)	[F] Total mapped reads of (B-2)
R1	         262706 (7.2656%)	[G] Total unmapped reads of (B-2)
R1	          25091 (0.6939%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3590641 (99.3061%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           4699 (0.1300%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1308.680	[I-3] RPMH of (I-1)
R1	      1299.599	[I-4] PPM of (I-1)
R1	    187278.307	[I-5] RPMU of (I-1)
R1	             10 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.785	[I-7] RPMH of (I-6)
R1	         2.766	[I-8] PPM of (I-6)
R1	       398.549	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        3676310 (100.0000%)	[A] Total raw reads
R2	        3615732 (98.3522%)	[B] Total reads after QC of (A)
R2		
R2	        3615732 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        6658536 (92.0773%)	[B-3] Total mapped reads of (B-2)x2
R2	         572928 (7.9227%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3305510 (91.4202%)	[F] Total mapped reads of (B-2)
R2	         310222 (8.5798%)	[G] Total unmapped reads of (B-2)
R2	          43320 (1.1981%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3572412 (98.8019%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           4539 (0.1255%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1270.570	[I-3] RPMH of (I-1)
R2	      1255.348	[I-4] PPM of (I-1)
R2	    104778.393	[I-5] RPMU of (I-1)
R2	              4 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.120	[I-7] RPMH of (I-6)
R2	         1.106	[I-8] PPM of (I-6)
R2	        92.336	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1306.1735	1297.1094	186919.6126	4690	0	4690	4690.000	467521	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1270.0103	1254.7943	104732.2253	4537	0	4537	4537.000	451898	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.5065	2.4891	358.6944	9	0	9	9.000	899	R1U	viral	Lymphocryptovirus	n/a	
0.2785	0.2766	39.8549	1	0	1	1.000	41	R1U	viral	Phix174microvirus	n/a	
<<
1.1197	1.1063	92.3361	4	0	4	4.000	395	R2U	viral	Lymphocryptovirus	n/a