# 2020/10/20 09:06:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244698	Replication ID
# SRP000540	Sample ID
# ERR244698_1.filt	Read1
# ERR244698_2.filt	Read2
R1	        1896256 (100.0000%)	[A] Total raw reads
R1	        1861288 (98.1559%)	[B] Total reads after QC of (A)
R1		
R1	        1861288 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3446694 (92.5889%)	[B-3] Total mapped reads of (B-2)x2
R1	         275882 (7.4111%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1733303 (93.1238%)	[F] Total mapped reads of (B-2)
R1	         127985 (6.8762%)	[G] Total unmapped reads of (B-2)
R1	          15457 (0.8304%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1845831 (99.1696%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3201 (0.1720%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1734.178	[I-3] RPMH of (I-1)
R1	      1719.777	[I-4] PPM of (I-1)
R1	    207090.638	[I-5] RPMU of (I-1)
R1	              3 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.625	[I-7] RPMH of (I-6)
R1	         1.612	[I-8] PPM of (I-6)
R1	       194.087	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1896256 (100.0000%)	[A] Total raw reads
R2	        1861288 (98.1559%)	[B] Total reads after QC of (A)
R2		
R2	        1861288 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3446694 (92.5889%)	[B-3] Total mapped reads of (B-2)x2
R2	         275882 (7.4111%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1713391 (92.0541%)	[F] Total mapped reads of (B-2)
R2	         147897 (7.9459%)	[G] Total unmapped reads of (B-2)
R2	          23330 (1.2534%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1837958 (98.7466%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3187 (0.1712%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1733.990	[I-3] RPMH of (I-1)
R2	      1712.255	[I-4] PPM of (I-1)
R2	    136605.229	[I-5] RPMU of (I-1)
R2	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         2.176	[I-7] RPMH of (I-6)
R2	         2.149	[I-8] PPM of (I-6)
R2	       171.453	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1733.0947	1718.7023	206961.2473	3199	0	3199	3199.000	318825	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1732.3573	1710.6434	136476.6395	3184	0	3184	3184.000	317812	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.6253	1.6118	194.0868	3	0	3	3.000	300	R1U	viral	Lymphocryptovirus	n/a	
<<
2.1763	2.1490	171.4531	4	0	4	4.000	400	R2U	viral	Lymphocryptovirus	n/a