# 2020/10/19 23:18:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242434	Replication ID
# SRP000540	Sample ID
# ERR242434_1.filt	Read1
# ERR242434_2.filt	Read2
R1	        2090246 (100.0000%)	[A] Total raw reads
R1	        2050406 (98.0940%)	[B] Total reads after QC of (A)
R1		
R1	        2050406 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3773278 (92.0129%)	[B-3] Total mapped reads of (B-2)x2
R1	         327534 (7.9871%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1904033 (92.8613%)	[F] Total mapped reads of (B-2)
R1	         146373 (7.1387%)	[G] Total unmapped reads of (B-2)
R1	          17281 (0.8428%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2033125 (99.1572%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3480 (0.1697%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1711.651	[I-3] RPMH of (I-1)
R1	      1697.225	[I-4] PPM of (I-1)
R1	    201377.235	[I-5] RPMU of (I-1)
R1	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.967	[I-7] RPMH of (I-6)
R1	         1.951	[I-8] PPM of (I-6)
R1	       231.468	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2090246 (100.0000%)	[A] Total raw reads
R2	        2050406 (98.0940%)	[B] Total reads after QC of (A)
R2		
R2	        2050406 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3773278 (92.0129%)	[B-3] Total mapped reads of (B-2)x2
R2	         327534 (7.9871%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1869245 (91.1646%)	[F] Total mapped reads of (B-2)
R2	         181161 (8.8354%)	[G] Total unmapped reads of (B-2)
R2	          31406 (1.5317%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2019000 (98.4683%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3387 (0.1652%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1677.563	[I-3] RPMH of (I-1)
R2	      1651.868	[I-4] PPM of (I-1)
R2	    107845.635	[I-5] RPMU of (I-1)
R2	              5 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         2.476	[I-7] RPMH of (I-6)
R2	         2.439	[I-8] PPM of (I-6)
R2	       159.205	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1709.6834	1695.2740	201145.7670	3476	0	3476	3476.000	346486	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1675.5820	1649.9171	107718.2704	3383	0	3383	3383.000	336927	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.9674	1.9508	231.4681	4	0	4	4.000	399	R1U	viral	Lymphocryptovirus	n/a	
<<
1.9812	1.9508	127.3642	4	0	4	4.000	397	R2U	viral	Lymphocryptovirus	n/a	
0.4953	0.4877	31.8410	1	0	1	1.000	99	R2U	viral	Phix174microvirus	n/a