# 2020/10/19 19:51:10
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242074	Replication ID
# SRP000540	Sample ID
# ERR242074_1.filt	Read1
# ERR242074_2.filt	Read2
R1	        2041746 (100.0000%)	[A] Total raw reads
R1	        2003811 (98.1420%)	[B] Total reads after QC of (A)
R1		
R1	        2003811 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3715988 (92.7230%)	[B-3] Total mapped reads of (B-2)x2
R1	         291634 (7.2770%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1867987 (93.2217%)	[F] Total mapped reads of (B-2)
R1	         135824 (6.7783%)	[G] Total unmapped reads of (B-2)
R1	          16337 (0.8153%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1987474 (99.1847%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3455 (0.1724%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1738.387	[I-3] RPMH of (I-1)
R1	      1724.215	[I-4] PPM of (I-1)
R1	    211483.136	[I-5] RPMU of (I-1)
R1	              1 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.503	[I-7] RPMH of (I-6)
R1	         0.499	[I-8] PPM of (I-6)
R1	        61.211	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2041746 (100.0000%)	[A] Total raw reads
R2	        2003811 (98.1420%)	[B] Total reads after QC of (A)
R2		
R2	        2003811 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3715988 (92.7230%)	[B-3] Total mapped reads of (B-2)x2
R2	         291634 (7.2770%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1848001 (92.2243%)	[F] Total mapped reads of (B-2)
R2	         155810 (7.7757%)	[G] Total unmapped reads of (B-2)
R2	          23980 (1.1967%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1979831 (98.8033%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3401 (0.1697%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1717.823	[I-3] RPMH of (I-1)
R2	      1697.266	[I-4] PPM of (I-1)
R2	    141826.522	[I-5] RPMU of (I-1)
R2	              8 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         4.041	[I-7] RPMH of (I-6)
R2	         3.992	[I-8] PPM of (I-6)
R2	       333.611	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1738.3875	1724.2145	211483.1364	3455	0	3455	3455.000	344599	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1717.3183	1696.7668	141784.8207	3400	0	3400	3400.000	339011	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.5032	0.4990	61.2107	1	0	1	1.000	99	R1U	viral	Lymphocryptovirus	n/a	
<<
4.0407	3.9924	333.6113	8	0	8	8.000	795	R2U	viral	Lymphocryptovirus	n/a