# 2020/10/19 18:02:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241834	Replication ID
# SRP000540	Sample ID
# ERR241834_1.filt	Read1
# ERR241834_2.filt	Read2
R1	        2039842 (100.0000%)	[A] Total raw reads
R1	        2001942 (98.1420%)	[B] Total reads after QC of (A)
R1		
R1	        2001942 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3713319 (92.7429%)	[B-3] Total mapped reads of (B-2)x2
R1	         290565 (7.2571%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1866852 (93.2521%)	[F] Total mapped reads of (B-2)
R1	         135090 (6.7479%)	[G] Total unmapped reads of (B-2)
R1	          16365 (0.8175%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1985577 (99.1825%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3435 (0.1716%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1729.976	[I-3] RPMH of (I-1)
R1	      1715.834	[I-4] PPM of (I-1)
R1	    209899.175	[I-5] RPMU of (I-1)
R1	              5 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         2.518	[I-7] RPMH of (I-6)
R1	         2.498	[I-8] PPM of (I-6)
R1	       305.530	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2039842 (100.0000%)	[A] Total raw reads
R2	        2001942 (98.1420%)	[B] Total reads after QC of (A)
R2		
R2	        2001942 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3713319 (92.7429%)	[B-3] Total mapped reads of (B-2)x2
R2	         290565 (7.2571%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1846467 (92.2338%)	[F] Total mapped reads of (B-2)
R2	         155475 (7.7662%)	[G] Total unmapped reads of (B-2)
R2	          23871 (1.1924%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1978071 (98.8076%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3420 (0.1708%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1728.957	[I-3] RPMH of (I-1)
R2	      1708.341	[I-4] PPM of (I-1)
R2	    143270.077	[I-5] RPMU of (I-1)
R2	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         2.022	[I-7] RPMH of (I-6)
R2	         1.998	[I-8] PPM of (I-6)
R2	       167.567	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1727.9612	1713.8359	209654.7510	3431	0	3431	3431.000	342239	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1727.4405	1706.8427	143144.4012	3417	0	3417	3417.000	340643	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.5182	2.4976	305.5301	5	0	5	5.000	499	R1U	viral	Lymphocryptovirus	n/a	
<<
2.0222	1.9981	167.5673	4	0	4	4.000	397	R2U	viral	Lymphocryptovirus	n/a