# 2020/10/19 13:33:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR240774	Replication ID
# SRP000540	Sample ID
# ERR240774_1.filt	Read1
# ERR240774_2.filt	Read2
R1	        1810423 (100.0000%)	[A] Total raw reads
R1	        1775606 (98.0769%)	[B] Total reads after QC of (A)
R1		
R1	        1775606 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3286833 (92.5552%)	[B-3] Total mapped reads of (B-2)x2
R1	         264379 (7.4448%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1652632 (93.0743%)	[F] Total mapped reads of (B-2)
R1	         122974 (6.9257%)	[G] Total unmapped reads of (B-2)
R1	          14736 (0.8299%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1760870 (99.1701%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           3005 (0.1692%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1706.543	[I-3] RPMH of (I-1)
R1	      1692.380	[I-4] PPM of (I-1)
R1	    203922.367	[I-5] RPMU of (I-1)
R1	              5 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.840	[I-7] RPMH of (I-6)
R1	         2.816	[I-8] PPM of (I-6)
R1	       339.305	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1810423 (100.0000%)	[A] Total raw reads
R2	        1775606 (98.0769%)	[B] Total reads after QC of (A)
R2		
R2	        1775606 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3286833 (92.5552%)	[B-3] Total mapped reads of (B-2)x2
R2	         264379 (7.4448%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1634201 (92.0362%)	[F] Total mapped reads of (B-2)
R2	         141405 (7.9638%)	[G] Total unmapped reads of (B-2)
R2	          21988 (1.2383%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1753618 (98.7617%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           3009 (0.1695%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1715.881	[I-3] RPMH of (I-1)
R2	      1694.633	[I-4] PPM of (I-1)
R2	    136847.371	[I-5] RPMU of (I-1)
R2	              3 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.711	[I-7] RPMH of (I-6)
R2	         1.690	[I-8] PPM of (I-6)
R2	       136.438	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1705.9749	1691.8168	203854.5060	3004	0	3004	3004.000	299407	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1714.1704	1692.9431	136710.9332	3006	0	3006	3006.000	299357	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.8395	2.8159	339.3051	5	0	5	5.000	499	R1U	viral	Lymphocryptovirus	n/a	
<<
0.5702	0.5632	45.4794	1	0	1	1.000	37	R2U	fungi	Penicillium	n/a	
<<
1.1405	1.1264	90.9587	2	0	2	2.000	196	R2U	viral	Lymphocryptovirus	n/a