# 2020/10/11 11:27:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR029674	Replication ID
# SRP000547	Sample ID
# SRR029674_1.filt	Read1
# SRR029674_2.filt	Read2
R1	       19565645 (100.0000%)	[A] Total raw reads
R1	       15735439 (80.4238%)	[B] Total reads after QC of (A)
R1		
R1	       15735439 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       27996414 (88.9597%)	[B-3] Total mapped reads of (B-2)x2
R1	        3474464 (11.0403%)	[B-4] Total unmapped reads of (B-2)x2
R1	       14128700 (89.7890%)	[F] Total mapped reads of (B-2)
R1	        1606739 (10.2110%)	[G] Total unmapped reads of (B-2)
R1	         302663 (1.9234%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       15432776 (98.0766%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          33696 (0.2141%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2183.405	[I-3] RPMH of (I-1)
R1	      2141.408	[I-4] PPM of (I-1)
R1	    111331.745	[I-5] RPMU of (I-1)
R1	            231 (0.0015%)	[I-6] Total chimeric reads of (I-1)
R1	        14.968	[I-7] RPMH of (I-6)
R1	        14.680	[I-8] PPM of (I-6)
R1	       763.225	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       19565645 (100.0000%)	[A] Total raw reads
R2	       15735439 (80.4238%)	[B] Total reads after QC of (A)
R2		
R2	       15735439 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       27996414 (88.9597%)	[B-3] Total mapped reads of (B-2)x2
R2	        3474464 (11.0403%)	[B-4] Total unmapped reads of (B-2)x2
R2	       13867714 (88.1305%)	[F] Total mapped reads of (B-2)
R2	        1867725 (11.8695%)	[G] Total unmapped reads of (B-2)
R2	         385881 (2.4523%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       15349558 (97.5477%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          32872 (0.2089%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2141.560	[I-3] RPMH of (I-1)
R2	      2089.042	[I-4] PPM of (I-1)
R2	     85186.884	[I-5] RPMU of (I-1)
R2	            171 (0.0011%)	[I-6] Total chimeric reads of (I-1)
R2	        11.140	[I-7] RPMH of (I-6)
R2	        10.867	[I-8] PPM of (I-6)
R2	       443.142	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2175.0052	2133.1701	110903.4405	33567	1	33566	33566.368	2175089	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2131.1363	2078.8743	84772.2484	32712	0	32712	32712.000	2100691	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0648	0.0636	3.3040	1	0	1	1.000	69	R1U	bacteria	Eubacterium	n/a	
0.0648	0.0636	3.3040	1	0	1	1.000	59	R1U	bacteria	Klebsiella	n/a	
0.0648	0.0636	3.3040	1	0	1	1.000	39	R1U	bacteria	Alcanivorax	n/a	
0.0648	0.0636	3.3040	1	0	1	1.000	36	R1U	bacteria	Thermodesulfobacterium	n/a	
0.0648	0.0636	3.3040	1	0	1	1.000	36	R1U	bacteria	Brachyspira	n/a	
<<
14.6442	14.3625	746.7051	226	0	226	226.000	14280	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0651	0.0636	2.5915	1	0	1	1.000	37	R2U	bacteria	Campylobacter	n/a	
<<
0.0651	0.0636	2.5915	1	0	1	1.000	68	R2U	fungi	Mitosporidium	n/a	
0.0651	0.0636	2.5915	1	0	1	1.000	40	R2U	fungi	Sordaria	n/a	
0.0651	0.0636	2.5915	1	0	1	1.000	40	R2U	fungi	Fusarium	n/a	
0.0651	0.0636	2.5915	1	0	1	1.000	36	R2U	fungi	Aspergillus	n/a	
<<
10.8146	10.5494	430.1844	166	0	166	166.000	10389	R2U	viral	Lymphocryptovirus	n/a