# 2020/10/15 14:38:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR263454	Replication ID
# SRP000540	Sample ID
# ERR263454_1.filt	Read1
# ERR263454_2.filt	Read2
R1	        3458272 (100.0000%)	[A] Total raw reads
R1	        3399059 (98.2878%)	[B] Total reads after QC of (A)
R1		
R1	        3399059 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        6259926 (92.0832%)	[B-3] Total mapped reads of (B-2)x2
R1	         538192 (7.9168%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3155120 (92.8233%)	[F] Total mapped reads of (B-2)
R1	         243939 (7.1767%)	[G] Total unmapped reads of (B-2)
R1	          24300 (0.7149%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3374759 (99.2851%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1731 (0.0509%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       512.925	[I-3] RPMH of (I-1)
R1	       509.259	[I-4] PPM of (I-1)
R1	     71234.568	[I-5] RPMU of (I-1)
R1	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.593	[I-7] RPMH of (I-6)
R1	         0.588	[I-8] PPM of (I-6)
R1	        82.304	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        3458272 (100.0000%)	[A] Total raw reads
R2	        3399059 (98.2878%)	[B] Total reads after QC of (A)
R2		
R2	        3399059 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        6259926 (92.0832%)	[B-3] Total mapped reads of (B-2)x2
R2	         538192 (7.9168%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3104806 (91.3431%)	[F] Total mapped reads of (B-2)
R2	         294253 (8.6569%)	[G] Total unmapped reads of (B-2)
R2	          42784 (1.2587%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3356275 (98.7413%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1710 (0.0503%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       509.493	[I-3] RPMH of (I-1)
R2	       503.080	[I-4] PPM of (I-1)
R2	     39968.212	[I-5] RPMU of (I-1)
R2	              1 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.298	[I-7] RPMH of (I-6)
R2	         0.294	[I-8] PPM of (I-6)
R2	        23.373	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.1853	1.1768	164.6091	4	0	4	4.000	398	ALL_R1	bacteria	Alcanivorax	1.08e-04
<<
511.1476	507.4934	70987.6543	1725	0	1725	1725.000	171844	ALL_R1	viral	Lymphocryptovirus	0.0
<<
506.8119	500.4326	39757.8534	1701	0	1701	1701.000	169471	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.5926	0.5884	82.3045	2	0	2	2.000	200	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2979	0.2942	23.3732	1	0	1	1.000	99	R2U	viral	Lymphocryptovirus	n/a