# 2020/10/11 07:22:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244828	Replication ID
# SRP000547	Sample ID
# ERR244828_1.filt	Read1
# ERR244828_2.filt	Read2
R1	        2215114 (100.0000%)	[A] Total raw reads
R1	        2172153 (98.0606%)	[B] Total reads after QC of (A)
R1		
R1	        2172153 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        4003834 (92.1628%)	[B-3] Total mapped reads of (B-2)x2
R1	         340472 (7.8372%)	[B-4] Total unmapped reads of (B-2)x2
R1	        2013521 (92.6970%)	[F] Total mapped reads of (B-2)
R1	         158632 (7.3030%)	[G] Total unmapped reads of (B-2)
R1	          18561 (0.8545%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2153592 (99.1455%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2798 (0.1288%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1299.225	[I-3] RPMH of (I-1)
R1	      1288.123	[I-4] PPM of (I-1)
R1	    150746.188	[I-5] RPMU of (I-1)
R1	              7 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         3.250	[I-7] RPMH of (I-6)
R1	         3.223	[I-8] PPM of (I-6)
R1	       377.135	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2215114 (100.0000%)	[A] Total raw reads
R2	        2172153 (98.0606%)	[B] Total reads after QC of (A)
R2		
R2	        2172153 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        4003834 (92.1628%)	[B-3] Total mapped reads of (B-2)x2
R2	         340472 (7.8372%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1990313 (91.6286%)	[F] Total mapped reads of (B-2)
R2	         181840 (8.3714%)	[G] Total unmapped reads of (B-2)
R2	          27951 (1.2868%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2144202 (98.7132%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2791 (0.1285%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1301.650	[I-3] RPMH of (I-1)
R2	      1284.900	[I-4] PPM of (I-1)
R2	     99853.315	[I-5] RPMU of (I-1)
R2	              6 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         2.798	[I-7] RPMH of (I-6)
R2	         2.762	[I-8] PPM of (I-6)
R2	       214.661	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1296.4387	1285.3607	150422.9298	2792	0	2792	2792.000	278372	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1297.4524	1280.7569	99531.3227	2782	0	2782	2782.000	277271	ALL_R2	viral	Lymphocryptovirus	0.0
<<
3.2504	3.2226	377.1349	7	0	7	7.000	695	R1U	viral	Lymphocryptovirus	n/a	
<<
2.7982	2.7622	214.6614	6	0	6	6.000	600	R2U	viral	Lymphocryptovirus	n/a