# 2020/10/18 14:06:32
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244693	Replication ID
# SRP000540	Sample ID
# ERR244693_1.filt	Read1
# ERR244693_2.filt	Read2
R1	        2002605 (100.0000%)	[A] Total raw reads
R1	        1967002 (98.2222%)	[B] Total reads after QC of (A)
R1		
R1	        1967002 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3637034 (92.4512%)	[B-3] Total mapped reads of (B-2)x2
R1	         296970 (7.5488%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1827891 (92.9278%)	[F] Total mapped reads of (B-2)
R1	         139111 (7.0722%)	[G] Total unmapped reads of (B-2)
R1	          14236 (0.7237%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1952766 (99.2763%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1983 (0.1008%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1015.483	[I-3] RPMH of (I-1)
R1	      1008.133	[I-4] PPM of (I-1)
R1	    139294.746	[I-5] RPMU of (I-1)
R1	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.000	[I-7] RPMH of (I-6)
R1	         0.000	[I-8] PPM of (I-6)
R1	         0.000	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2002605 (100.0000%)	[A] Total raw reads
R2	        1967002 (98.2222%)	[B] Total reads after QC of (A)
R2		
R2	        1967002 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3637034 (92.4512%)	[B-3] Total mapped reads of (B-2)x2
R2	         296970 (7.5488%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1809143 (91.9746%)	[F] Total mapped reads of (B-2)
R2	         157859 (8.0254%)	[G] Total unmapped reads of (B-2)
R2	          21436 (1.0898%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1945566 (98.9102%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1932 (0.0982%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       993.027	[I-3] RPMH of (I-1)
R2	       982.205	[I-4] PPM of (I-1)
R2	     90128.755	[I-5] RPMU of (I-1)
R2	              5 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         2.570	[I-7] RPMH of (I-6)
R2	         2.542	[I-8] PPM of (I-6)
R2	       233.253	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1014.4585	1007.1164	139154.2568	1981	0	1981	1981.000	197620	ALL_R1	viral	Lymphocryptovirus	0.0
<<
992.5132	981.6970	90082.1049	1931	0	1931	1931.000	192830	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.0560	2.0336	186.6020	4	0	4	4.000	400	R2U	viral	Lymphocryptovirus	n/a