# 2020/10/18 12:22:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244493	Replication ID
# SRP000540	Sample ID
# ERR244493_1.filt	Read1
# ERR244493_2.filt	Read2
R1	        2013009 (100.0000%)	[A] Total raw reads
R1	        1977615 (98.2417%)	[B] Total reads after QC of (A)
R1		
R1	        1977615 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3653337 (92.3672%)	[B-3] Total mapped reads of (B-2)x2
R1	         301893 (7.6328%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1835845 (92.8313%)	[F] Total mapped reads of (B-2)
R1	         141770 (7.1687%)	[G] Total unmapped reads of (B-2)
R1	          14568 (0.7366%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1963047 (99.2634%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1849 (0.0935%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       941.903	[I-3] RPMH of (I-1)
R1	       934.965	[I-4] PPM of (I-1)
R1	    126922.021	[I-5] RPMU of (I-1)
R1	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.000	[I-7] RPMH of (I-6)
R1	         0.000	[I-8] PPM of (I-6)
R1	         0.000	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2013009 (100.0000%)	[A] Total raw reads
R2	        1977615 (98.2417%)	[B] Total reads after QC of (A)
R2		
R2	        1977615 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3653337 (92.3672%)	[B-3] Total mapped reads of (B-2)x2
R2	         301893 (7.6328%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1817492 (91.9032%)	[F] Total mapped reads of (B-2)
R2	         160123 (8.0968%)	[G] Total unmapped reads of (B-2)
R2	          21638 (1.0941%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1955977 (98.9059%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1794 (0.0907%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       917.189	[I-3] RPMH of (I-1)
R2	       907.153	[I-4] PPM of (I-1)
R2	     82909.696	[I-5] RPMU of (I-1)
R2	              5 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R2	         2.556	[I-7] RPMH of (I-6)
R2	         2.528	[I-8] PPM of (I-6)
R2	       231.075	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
941.3937	934.4589	126853.3773	1848	0	1848	1848.000	184292	ALL_R1	viral	Lymphocryptovirus	0.0
<<
917.1887	907.1533	82909.6959	1794	0	1794	1794.000	178870	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.5563	2.5283	231.0750	5	0	5	5.000	499	R2U	viral	Lymphocryptovirus	n/a