# 2020/10/15 12:17:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244388	Replication ID
# SRP000540	Sample ID
# ERR244388_1.filt	Read1
# ERR244388_2.filt	Read2
R1	        3433933 (100.0000%)	[A] Total raw reads
R1	        3374311 (98.2637%)	[B] Total reads after QC of (A)
R1		
R1	        3374311 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        6219888 (92.1653%)	[B-3] Total mapped reads of (B-2)x2
R1	         528734 (7.8347%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3134063 (92.8801%)	[F] Total mapped reads of (B-2)
R1	         240248 (7.1199%)	[G] Total unmapped reads of (B-2)
R1	          24233 (0.7182%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3350078 (99.2818%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1630 (0.0483%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       486.556	[I-3] RPMH of (I-1)
R1	       483.062	[I-4] PPM of (I-1)
R1	     67263.649	[I-5] RPMU of (I-1)
R1	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.000	[I-7] RPMH of (I-6)
R1	         0.000	[I-8] PPM of (I-6)
R1	         0.000	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        3433933 (100.0000%)	[A] Total raw reads
R2	        3374311 (98.2637%)	[B] Total reads after QC of (A)
R2		
R2	        3374311 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        6219888 (92.1653%)	[B-3] Total mapped reads of (B-2)x2
R2	         528734 (7.8347%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3085825 (91.4505%)	[F] Total mapped reads of (B-2)
R2	         288486 (8.5495%)	[G] Total unmapped reads of (B-2)
R2	          42597 (1.2624%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3331714 (98.7376%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1618 (0.0480%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       485.636	[I-3] RPMH of (I-1)
R2	       479.505	[I-4] PPM of (I-1)
R2	     37983.896	[I-5] RPMU of (I-1)
R2	              1 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.300	[I-7] RPMH of (I-6)
R2	         0.296	[I-8] PPM of (I-6)
R2	        23.476	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
485.3618	481.8762	67098.5846	1626	0	1626	1626.000	162199	ALL_R1	viral	Lymphocryptovirus	0.0
<<
483.8350	477.7272	37843.0406	1612	0	1612	1612.000	160772	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.3001	0.2964	23.4758	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a