# 2020/10/18 10:49:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242861	Replication ID
# SRP000540	Sample ID
# ERR242861_1.filt	Read1
# ERR242861_2.filt	Read2
R1	        2032606 (100.0000%)	[A] Total raw reads
R1	        1993702 (98.0860%)	[B] Total reads after QC of (A)
R1		
R1	        1993702 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3665752 (91.9333%)	[B-3] Total mapped reads of (B-2)x2
R1	         321652 (8.0667%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1847830 (92.6834%)	[F] Total mapped reads of (B-2)
R1	         145872 (7.3166%)	[G] Total unmapped reads of (B-2)
R1	          14726 (0.7386%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1978976 (99.2614%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1857 (0.0931%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       938.364	[I-3] RPMH of (I-1)
R1	       931.433	[I-4] PPM of (I-1)
R1	    126103.490	[I-5] RPMU of (I-1)
R1	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         2.021	[I-7] RPMH of (I-6)
R1	         2.006	[I-8] PPM of (I-6)
R1	       271.628	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2032606 (100.0000%)	[A] Total raw reads
R2	        1993702 (98.0860%)	[B] Total reads after QC of (A)
R2		
R2	        1993702 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3665752 (91.9333%)	[B-3] Total mapped reads of (B-2)x2
R2	         321652 (8.0667%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1817922 (91.1832%)	[F] Total mapped reads of (B-2)
R2	         175780 (8.8168%)	[G] Total unmapped reads of (B-2)
R2	          26609 (1.3347%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1967093 (98.6653%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1839 (0.0922%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       934.882	[I-3] RPMH of (I-1)
R2	       922.405	[I-4] PPM of (I-1)
R2	     69111.955	[I-5] RPMU of (I-1)
R2	              7 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R2	         3.559	[I-7] RPMH of (I-6)
R2	         3.511	[I-8] PPM of (I-6)
R2	       263.069	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
935.3322	928.4236	125696.0478	1851	0	1851	1851.000	184598	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2.0335	2.0063	150.3251	4	0	4	4.000	395	ALL_R2	bacteria	Alcanivorax	2.94e-04
<<
931.8319	919.3952	68886.4670	1833	0	1833	1833.000	182854	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.5159	1.5047	203.7213	3	0	3	3.000	297	R1U	viral	Lymphocryptovirus	n/a	
<<
3.0502	3.0095	225.4876	6	0	6	6.000	600	R2U	viral	Lymphocryptovirus	n/a	
0.5084	0.5016	37.5813	1	0	1	1.000	99	R2U	viral	Phix174microvirus	n/a