# 2020/10/16 14:45:08
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242297	Replication ID
# SRP000540	Sample ID
# ERR242297_1.filt	Read1
# ERR242297_2.filt	Read2
R1	        2267864 (100.0000%)	[A] Total raw reads
R1	        2221540 (97.9574%)	[B] Total reads after QC of (A)
R1		
R1	        2221540 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        4089421 (92.0402%)	[B-3] Total mapped reads of (B-2)x2
R1	         353659 (7.9598%)	[B-4] Total unmapped reads of (B-2)x2
R1	        2061165 (92.7809%)	[F] Total mapped reads of (B-2)
R1	         160375 (7.2191%)	[G] Total unmapped reads of (B-2)
R1	          19020 (0.8562%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2202520 (99.1438%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2650 (0.1193%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1203.167	[I-3] RPMH of (I-1)
R1	      1192.866	[I-4] PPM of (I-1)
R1	    139327.024	[I-5] RPMU of (I-1)
R1	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         1.816	[I-7] RPMH of (I-6)
R1	         1.801	[I-8] PPM of (I-6)
R1	       210.305	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2267864 (100.0000%)	[A] Total raw reads
R2	        2221540 (97.9574%)	[B] Total reads after QC of (A)
R2		
R2	        2221540 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        4089421 (92.0402%)	[B-3] Total mapped reads of (B-2)x2
R2	         353659 (7.9598%)	[B-4] Total unmapped reads of (B-2)x2
R2	        2028256 (91.2995%)	[F] Total mapped reads of (B-2)
R2	         193284 (8.7005%)	[G] Total unmapped reads of (B-2)
R2	          32468 (1.4615%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2189072 (98.5385%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2618 (0.1178%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1195.941	[I-3] RPMH of (I-1)
R2	      1178.462	[I-4] PPM of (I-1)
R2	     80633.239	[I-5] RPMU of (I-1)
R2	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.914	[I-7] RPMH of (I-6)
R2	         0.900	[I-8] PPM of (I-6)
R2	        61.599	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1202.7133	1192.4161	139274.4479	2649	0	2649	2649.000	264392	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1194.5701	1177.1114	80540.8402	2615	0	2615	2615.000	260684	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.8161	1.8006	210.3049	4	0	4	4.000	399	R1U	viral	Lymphocryptovirus	n/a	
<<
0.9136	0.9003	61.5991	2	0	2	2.000	200	R2U	viral	Lymphocryptovirus	n/a