# 2020/10/16 12:56:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR242137	Replication ID
# SRP000540	Sample ID
# ERR242137_1.filt	Read1
# ERR242137_2.filt	Read2
R1	        2283472 (100.0000%)	[A] Total raw reads
R1	        2236974 (97.9637%)	[B] Total reads after QC of (A)
R1		
R1	        2236974 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        4118421 (92.0534%)	[B-3] Total mapped reads of (B-2)x2
R1	         355527 (7.9466%)	[B-4] Total unmapped reads of (B-2)x2
R1	        2076191 (92.8125%)	[F] Total mapped reads of (B-2)
R1	         160783 (7.1875%)	[G] Total unmapped reads of (B-2)
R1	          18980 (0.8485%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        2217994 (99.1515%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2667 (0.1192%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1202.438	[I-3] RPMH of (I-1)
R1	      1192.236	[I-4] PPM of (I-1)
R1	    140516.333	[I-5] RPMU of (I-1)
R1	              5 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         2.254	[I-7] RPMH of (I-6)
R1	         2.235	[I-8] PPM of (I-6)
R1	       263.435	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        2283472 (100.0000%)	[A] Total raw reads
R2	        2236974 (97.9637%)	[B] Total reads after QC of (A)
R2		
R2	        2236974 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        4118421 (92.0534%)	[B-3] Total mapped reads of (B-2)x2
R2	         355527 (7.9466%)	[B-4] Total unmapped reads of (B-2)x2
R2	        2042230 (91.2943%)	[F] Total mapped reads of (B-2)
R2	         194744 (8.7057%)	[G] Total unmapped reads of (B-2)
R2	          32739 (1.4635%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        2204235 (98.5365%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2593 (0.1159%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1176.372	[I-3] RPMH of (I-1)
R2	      1159.155	[I-4] PPM of (I-1)
R2	     79202.175	[I-5] RPMU of (I-1)
R2	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.907	[I-7] RPMH of (I-6)
R2	         0.894	[I-8] PPM of (I-6)
R2	        61.089	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1201.5362	1191.3415	140410.9589	2665	0	2665	2665.000	265918	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1174.5572	1157.3671	79079.9963	2589	0	2589	2589.000	258065	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.2543	2.2352	263.4352	5	0	5	5.000	498	R1U	viral	Lymphocryptovirus	n/a	
<<
0.9073	0.8941	61.0892	2	0	2	2.000	193	R2U	viral	Lymphocryptovirus	n/a