# 2020/10/19 07:53:32
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241765	Replication ID
# SRP000540	Sample ID
# ERR241765_1.filt	Read1
# ERR241765_2.filt	Read2
R1	        3924198 (100.0000%)	[A] Total raw reads
R1	        3857772 (98.3073%)	[B] Total reads after QC of (A)
R1		
R1	        3857772 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        7146618 (92.6262%)	[B-3] Total mapped reads of (B-2)x2
R1	         568926 (7.3738%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3592147 (93.1145%)	[F] Total mapped reads of (B-2)
R1	         265625 (6.8855%)	[G] Total unmapped reads of (B-2)
R1	          29648 (0.7685%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3828124 (99.2315%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2917 (0.0756%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       761.992	[I-3] RPMH of (I-1)
R1	       756.136	[I-4] PPM of (I-1)
R1	     98387.750	[I-5] RPMU of (I-1)
R1	              4 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.045	[I-7] RPMH of (I-6)
R1	         1.037	[I-8] PPM of (I-6)
R1	       134.916	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        3924198 (100.0000%)	[A] Total raw reads
R2	        3857772 (98.3073%)	[B] Total reads after QC of (A)
R2		
R2	        3857772 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        7146618 (92.6262%)	[B-3] Total mapped reads of (B-2)x2
R2	         568926 (7.3738%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3554471 (92.1379%)	[F] Total mapped reads of (B-2)
R2	         303301 (7.8621%)	[G] Total unmapped reads of (B-2)
R2	          44624 (1.1567%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3813148 (98.8433%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2841 (0.0736%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       745.054	[I-3] RPMH of (I-1)
R2	       736.435	[I-4] PPM of (I-1)
R2	     63665.292	[I-5] RPMU of (I-1)
R2	              3 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.787	[I-7] RPMH of (I-6)
R2	         0.778	[I-8] PPM of (I-6)
R2	        67.228	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
761.7308	755.8767	98354.0205	2916	0	2916	2916.000	291229	ALL_R1	viral	Lymphocryptovirus	0.0
<<
745.0537	736.4354	63665.2922	2841	0	2841	2841.000	283768	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.0449	1.0369	134.9164	4	0	4	4.000	400	R1U	viral	Lymphocryptovirus	n/a	
<<
0.7868	0.7777	67.2284	3	0	3	3.000	298	R2U	viral	Lymphocryptovirus	n/a