# 2020/10/15 08:43:02
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241588	Replication ID
# SRP000540	Sample ID
# ERR241588_1.filt	Read1
# ERR241588_2.filt	Read2
R1	        3620765 (100.0000%)	[A] Total raw reads
R1	        3558429 (98.2784%)	[B] Total reads after QC of (A)
R1		
R1	        3558429 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        6591934 (92.6242%)	[B-3] Total mapped reads of (B-2)x2
R1	         524924 (7.3758%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3313317 (93.1118%)	[F] Total mapped reads of (B-2)
R1	         245112 (6.8882%)	[G] Total unmapped reads of (B-2)
R1	          25280 (0.7104%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3533149 (99.2896%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           1898 (0.0533%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       537.198	[I-3] RPMH of (I-1)
R1	       533.381	[I-4] PPM of (I-1)
R1	     75079.114	[I-5] RPMU of (I-1)
R1	              5 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         1.415	[I-7] RPMH of (I-6)
R1	         1.405	[I-8] PPM of (I-6)
R1	       197.785	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        3620765 (100.0000%)	[A] Total raw reads
R2	        3558429 (98.2784%)	[B] Total reads after QC of (A)
R2		
R2	        3558429 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        6591934 (92.6242%)	[B-3] Total mapped reads of (B-2)x2
R2	         524924 (7.3758%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3278617 (92.1366%)	[F] Total mapped reads of (B-2)
R2	         279812 (7.8634%)	[G] Total unmapped reads of (B-2)
R2	          38578 (1.0841%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3519851 (98.9159%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           1871 (0.0526%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       531.557	[I-3] RPMH of (I-1)
R2	       525.794	[I-4] PPM of (I-1)
R2	     48499.145	[I-5] RPMU of (I-1)
R2	              1 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.284	[I-7] RPMH of (I-6)
R2	         0.281	[I-8] PPM of (I-6)
R2	        25.921	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
536.3487	532.5384	74960.4430	1895	0	1895	1895.000	189148	ALL_R1	viral	Lymphocryptovirus	0.0
<<
530.7043	524.9508	48421.3801	1868	0	1868	1868.000	186517	ALL_R2	viral	Lymphocryptovirus	0.0
<<
1.4152	1.4051	197.7848	5	0	5	5.000	499	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2841	0.2810	25.9215	1	0	1	1.000	100	R2U	viral	Lymphocryptovirus	n/a