# 2018/01/31 06:31:44
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ENCSR314LXG_2	Replication ID
# ENCSR314LXG	Sample ID
# ENCFF002DLT	Read1
# ENCFF002DLU	Read2
R1	  77190215 (100.0000%)	[A] Total raw reads
R1	  76171953 (98.6808%)	[B] Total reads after QC of (A)
R1		
R1	  76171953 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	 145447026 (95.4728%)	[B-3] Total mapped reads of (B-2)x2
R1	   6896880 (4.5272%)	[B-4] Total unmapped reads of (B-2)x2
R1	  72801213 (95.5748%)	[F] Total mapped reads of (B-2)
R1	   3370740 (4.4252%)	[G] Total unmapped reads of (B-2)
R1	   1279618 (1.6799%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	  74892335 (98.3201%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	    754058 (0.9899%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	     10068.560	[I-3] RPMH of (I-1)
R1	      9899.418	[I-4] PPM of (I-1)
R1	       266 (0.0003%)	[I-5] Total chimeric reads of (I-1)
R1	         3.552	[I-7] RPMH of (I-5)
R1	         3.492	[I-8] PPM of (I-5)
R1		
## -----------------------------------------

R2	  77190215 (100.0000%)	[A] Total raw reads
R2	  76171953 (98.6808%)	[B] Total reads after QC of (A)
R2		
R2	  76171953 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	 145447026 (95.4728%)	[B-3] Total mapped reads of (B-2)x2
R2	   6896880 (4.5272%)	[B-4] Total unmapped reads of (B-2)x2
R2	  72645813 (95.3708%)	[F] Total mapped reads of (B-2)
R2	   3526140 (4.6292%)	[G] Total unmapped reads of (B-2)
R2	   1316635 (1.7285%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	  74855318 (98.2715%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	    746718 (0.9803%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      9975.484	[I-3] RPMH of (I-1)
R2	      9803.057	[I-4] PPM of (I-1)
R2	       224 (0.0003%)	[I-5] Total chimeric reads of (I-1)
R2	         2.992	[I-7] RPMH of (I-5)
R2	         2.941	[I-8] PPM of (I-5)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMH   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2939.8059	2890.4199	608886	608461	425	220168.929	58213208	ALL_R1	bacteria	Pseudomonas	1.73e-14
1508.6233	1483.2798	114189	1592	112597	112984.320	11315511	ALL_R1	bacteria	Bacillus	0.0
92.1619	90.6137	9639	5225	4414	6902.221	953787	ALL_R1	bacteria	Pelomonas	0.0
35.9907	35.3861	4834	3427	1407	2695.427	472510	ALL_R1	bacteria	Escherichia	0.0
34.3763	33.7988	3193	1085	2108	2574.520	314665	ALL_R1	bacteria	Bradyrhizobium	0.0
11.2763	11.0868	1927	1498	429	844.506	192562	ALL_R1	bacteria	Cutibacterium	7.64e-13
<<
2967.7770	2917.9211	613585	613584	1	222263.752	58668904	ALL_R1	viral	Phix174microvirus	n/a
<<
2816.0401	2767.3647	607744	607366	378	210795.577	55768255	ALL_R2	bacteria	Pseudomonas	5.43e-07
1511.7966	1485.6651	114297	1486	112811	113166.012	11440924	ALL_R2	bacteria	Bacillus	0.0
97.9533	96.2601	9775	4798	4977	7332.322	966919	ALL_R2	bacteria	Pelomonas	0.0
31.3449	30.8031	2653	554	2099	2346.331	260365	ALL_R2	bacteria	Bradyrhizobium	0.0
13.2865	13.0568	2039	1655	384	994.564	202781	ALL_R2	bacteria	Cutibacterium	1.56e-06
<<
2769.6155	2721.7426	598744	598739	5	207320.449	54919488	ALL_R2	viral	Phix174microvirus	n/a