# 2020/10/18 22:48:35
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR241137	Replication ID
# SRP000540	Sample ID
# ERR241137_1.filt	Read1
# ERR241137_2.filt	Read2
R1	        3799330 (100.0000%)	[A] Total raw reads
R1	        3735442 (98.3184%)	[B] Total reads after QC of (A)
R1		
R1	        3735442 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        6906836 (92.4501%)	[B-3] Total mapped reads of (B-2)x2
R1	         564048 (7.5499%)	[B-4] Total unmapped reads of (B-2)x2
R1	        3471638 (92.9378%)	[F] Total mapped reads of (B-2)
R1	         263804 (7.0622%)	[G] Total unmapped reads of (B-2)
R1	          29159 (0.7806%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        3706283 (99.2194%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           2723 (0.0729%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       734.698	[I-3] RPMH of (I-1)
R1	       728.963	[I-4] PPM of (I-1)
R1	     93384.547	[I-5] RPMU of (I-1)
R1	             10 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.698	[I-7] RPMH of (I-6)
R1	         2.677	[I-8] PPM of (I-6)
R1	       342.947	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        3799330 (100.0000%)	[A] Total raw reads
R2	        3735442 (98.3184%)	[B] Total reads after QC of (A)
R2		
R2	        3735442 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        6906836 (92.4501%)	[B-3] Total mapped reads of (B-2)x2
R2	         564048 (7.5499%)	[B-4] Total unmapped reads of (B-2)x2
R2	        3435198 (91.9623%)	[F] Total mapped reads of (B-2)
R2	         300244 (8.0377%)	[G] Total unmapped reads of (B-2)
R2	          44595 (1.1938%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        3690847 (98.8062%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           2677 (0.0717%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       725.308	[I-3] RPMH of (I-1)
R2	       716.649	[I-4] PPM of (I-1)
R2	     60029.151	[I-5] RPMU of (I-1)
R2	              4 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.084	[I-7] RPMH of (I-6)
R2	         1.071	[I-8] PPM of (I-6)
R2	        89.696	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
734.6983	728.9633	93384.5468	2723	0	2723	2723.000	271651	ALL_R1	viral	Lymphocryptovirus	0.0
<<
725.3078	716.6488	60029.1513	2677	0	2677	2677.000	267029	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.4283	2.4094	308.6526	9	0	9	9.000	900	R1U	viral	Lymphocryptovirus	n/a	
<<
1.0838	1.0708	89.6962	4	0	4	4.000	397	R2U	viral	Lymphocryptovirus	n/a