# 2020/10/09 10:17:59
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR234327	Replication ID
# SRP000547	Sample ID
# ERR234327_1.filt	Read1
# ERR234327_2.filt	Read2
R1	      112425206 (100.0000%)	[A] Total raw reads
R1	      108692617 (96.6799%)	[B] Total reads after QC of (A)
R1		
R1	      108692617 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	      198588317 (91.3532%)	[B-3] Total mapped reads of (B-2)x2
R1	       18796917 (8.6468%)	[B-4] Total unmapped reads of (B-2)x2
R1	      100219071 (92.2041%)	[F] Total mapped reads of (B-2)
R1	        8473546 (7.7959%)	[G] Total unmapped reads of (B-2)
R1	        1359571 (1.2508%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	      107333046 (98.7492%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	         182427 (0.1678%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      1699.635	[I-3] RPMH of (I-1)
R1	      1678.375	[I-4] PPM of (I-1)
R1	    134179.826	[I-5] RPMU of (I-1)
R1	           1220 (0.0011%)	[I-6] Total chimeric reads of (I-1)
R1	        11.367	[I-7] RPMH of (I-6)
R1	        11.224	[I-8] PPM of (I-6)
R1	       897.342	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	      112425206 (100.0000%)	[A] Total raw reads
R2	      108692617 (96.6799%)	[B] Total reads after QC of (A)
R2		
R2	      108692617 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	      198588317 (91.3532%)	[B-3] Total mapped reads of (B-2)x2
R2	       18796917 (8.6468%)	[B-4] Total unmapped reads of (B-2)x2
R2	       98369246 (90.5022%)	[F] Total mapped reads of (B-2)
R2	       10323371 (9.4978%)	[G] Total unmapped reads of (B-2)
R2	        1985032 (1.8263%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	      106707585 (98.1737%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	         179218 (0.1649%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      1679.524	[I-3] RPMH of (I-1)
R2	      1648.852	[I-4] PPM of (I-1)
R2	     90284.691	[I-5] RPMU of (I-1)
R2	           1178 (0.0011%)	[I-6] Total chimeric reads of (I-1)
R2	        11.040	[I-7] RPMH of (I-6)
R2	        10.838	[I-8] PPM of (I-6)
R2	       593.441	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1694.8555	1673.6555	133802.5009	181914	0	181914	181914.000	17689613	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2.3001	2.2581	123.6444	446	318	128	245.438	33613	ALL_R2	bacteria	Alcanivorax	6.69e-04
<<
1671.4932	1640.9670	89852.9595	178361	0	178361	178361.000	17025601	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.0485	0.0479	3.8328	9	6	3	5.211	853	R1U	bacteria	Eubacterium	n/a	
0.0289	0.0286	2.2838	5	3	2	3.105	407	R1U	bacteria	Alcanivorax	n/a	
<<
11.2267	11.0863	886.3090	1205	0	1205	1205.000	117008	R1U	viral	Lymphocryptovirus	n/a	
<<
0.0652	0.0640	3.5032	12	8	4	6.954	828	R2U	bacteria	Alcanivorax	n/a	
0.0264	0.0259	1.4196	8	6	2	2.818	727	R2U	bacteria	Campylobacter	n/a	
0.0205	0.0201	1.1022	8	7	1	2.188	790	R2U	bacteria	Eubacterium	n/a	
0.0187	0.0184	1.0075	2	0	2	2.000	73	R2U	bacteria	Bacillus	n/a	
<<
0.0223	0.0219	1.1970	4	2	2	2.376	329	R2U	fungi	Mitosporidium	n/a	
0.0188	0.0185	1.0111	3	1	2	2.007	121	R2U	fungi	Colletotrichum	n/a	
<<
10.6178	10.4239	570.7717	1133	0	1133	1133.000	107988	R2U	viral	Lymphocryptovirus	n/a