# 2020/10/03 10:05:33
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR068129	Replication ID
# SRP000547	Sample ID
# SRR068129_1.filt	Read1
# SRR068129_2.filt	Read2
R1	       42970660 (100.0000%)	[A] Total raw reads
R1	       33927924 (78.9560%)	[B] Total reads after QC of (A)
R1		
R1	       33927924 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       61879881 (91.1931%)	[B-3] Total mapped reads of (B-2)x2
R1	        5975967 (8.8069%)	[B-4] Total unmapped reads of (B-2)x2
R1	       31305264 (92.2699%)	[F] Total mapped reads of (B-2)
R1	        2622660 (7.7301%)	[G] Total unmapped reads of (B-2)
R1	         358803 (1.0575%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       33569121 (98.9425%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          32996 (0.0973%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       982.927	[I-3] RPMH of (I-1)
R1	       972.532	[I-4] PPM of (I-1)
R1	     91961.327	[I-5] RPMU of (I-1)
R1	            210 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R1	         6.256	[I-7] RPMH of (I-6)
R1	         6.190	[I-8] PPM of (I-6)
R1	       585.279	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       42970660 (100.0000%)	[A] Total raw reads
R2	       33927924 (78.9560%)	[B] Total reads after QC of (A)
R2		
R2	       33927924 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       61879881 (91.1931%)	[B-3] Total mapped reads of (B-2)x2
R2	        5975967 (8.8069%)	[B-4] Total unmapped reads of (B-2)x2
R2	       30574617 (90.1164%)	[F] Total mapped reads of (B-2)
R2	        3353307 (9.8836%)	[G] Total unmapped reads of (B-2)
R2	         443631 (1.3076%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       33484293 (98.6924%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          32268 (0.0951%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       963.676	[I-3] RPMH of (I-1)
R2	       951.075	[I-4] PPM of (I-1)
R2	     72736.125	[I-5] RPMU of (I-1)
R2	            187 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R2	         5.585	[I-7] RPMH of (I-6)
R2	         5.512	[I-8] PPM of (I-6)
R2	       421.521	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
7.3975	7.3193	692.0984	395	233	162	248.327	21624	ALL_R1	bacteria	Alcanivorax	0.0
4.3048	4.2593	402.7503	146	2	144	144.508	9985	ALL_R1	bacteria	Acinetobacter	0.0
<<
964.9940	954.7887	90283.5261	32394	0	32394	32394.000	1893209	ALL_R1	viral	Lymphocryptovirus	0.0
<<
5.2714	5.2025	397.8735	331	245	86	176.509	21253	ALL_R2	bacteria	Alcanivorax	4.27e-144
4.2464	4.1909	320.5096	144	2	142	142.188	10512	ALL_R2	bacteria	Acinetobacter	0.0
<<
947.6085	935.2178	71523.4057	31730	0	31730	31730.000	2144418	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.4260	0.4215	39.8520	25	17	8	14.299	1233	R1U	bacteria	Alcanivorax	n/a	
<<
5.5110	5.4527	515.6033	185	0	185	185.000	10874	R1U	viral	Lymphocryptovirus	n/a	
<<
0.3520	0.3474	26.5649	25	21	4	11.785	1717	R2U	bacteria	Alcanivorax	n/a	
0.0299	0.0295	2.2541	1	0	1	1.000	76	R2U	bacteria	Acinetobacter	n/a	
0.0299	0.0295	2.2541	1	0	1	1.000	49	R2U	bacteria	Klebsiella	n/a	
0.0299	0.0295	2.2541	1	0	1	1.000	36	R2U	bacteria	Fusobacterium	n/a	
<<
0.0299	0.0295	2.2541	1	0	1	1.000	73	R2U	fungi	Colletotrichum	n/a	
0.0299	0.0295	2.2541	1	0	1	1.000	59	R2U	fungi	Mitosporidium	n/a	
<<
4.6589	4.5980	351.6436	156	0	156	156.000	10302	R2U	viral	Lymphocryptovirus	n/a