# 2020/09/06 02:11:33
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR062558	Replication ID
# SRP000542	Sample ID
# SRR062558_1.filt	Read1
# SRR062558_2.filt	Read2
R1	       17855854 (100.0000%)	[A] Total raw reads
R1	       17338957 (97.1052%)	[B] Total reads after QC of (A)
R1		
R1	       17338957 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       32199600 (92.8533%)	[B-3] Total mapped reads of (B-2)x2
R1	        2478314 (7.1467%)	[B-4] Total unmapped reads of (B-2)x2
R1	       16116349 (92.9488%)	[F] Total mapped reads of (B-2)
R1	        1222608 (7.0512%)	[G] Total unmapped reads of (B-2)
R1	         135683 (0.7825%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       17203274 (99.2175%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          12843 (0.0741%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       746.544	[I-3] RPMH of (I-1)
R1	       740.702	[I-4] PPM of (I-1)
R1	     94654.452	[I-5] RPMU of (I-1)
R1	              7 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R1	         0.407	[I-7] RPMH of (I-6)
R1	         0.404	[I-8] PPM of (I-6)
R1	        51.591	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       17855854 (100.0000%)	[A] Total raw reads
R2	       17338957 (97.1052%)	[B] Total reads after QC of (A)
R2		
R2	       17338957 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       32199600 (92.8533%)	[B-3] Total mapped reads of (B-2)x2
R2	        2478314 (7.1467%)	[B-4] Total unmapped reads of (B-2)x2
R2	       16083251 (92.7579%)	[F] Total mapped reads of (B-2)
R2	        1255706 (7.2421%)	[G] Total unmapped reads of (B-2)
R2	         143369 (0.8269%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       17195588 (99.1731%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          12753 (0.0736%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       741.644	[I-3] RPMH of (I-1)
R2	       735.511	[I-4] PPM of (I-1)
R2	     88952.284	[I-5] RPMU of (I-1)
R2	              9 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.523	[I-7] RPMH of (I-6)
R2	         0.519	[I-8] PPM of (I-6)
R2	        62.775	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
743.8700	738.0490	94315.4264	12797	0	12797	12797.000	1149056	ALL_R1	viral	Lymphocryptovirus	0.0
<<
738.9105	732.8007	88624.4586	12706	0	12706	12706.000	1157211	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.3488	0.3460	44.2207	6	0	6	6.000	495	R1U	viral	Lymphocryptovirus	n/a	
<<
0.3489	0.3460	41.8501	6	0	6	6.000	550	R2U	viral	Lymphocryptovirus	n/a