# 2020/09/06 15:23:03
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR035027	Replication ID
# SRP000547	Sample ID
# SRR035027_1.filt	Read1
# SRR035027_2.filt	Read2
R1	       27120049 (100.0000%)	[A] Total raw reads
R1	       22786684 (84.0215%)	[B] Total reads after QC of (A)
R1		
R1	       22786684 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       41874956 (91.8847%)	[B-3] Total mapped reads of (B-2)x2
R1	        3698412 (8.1153%)	[B-4] Total unmapped reads of (B-2)x2
R1	       20969055 (92.0233%)	[F] Total mapped reads of (B-2)
R1	        1817629 (7.9767%)	[G] Total unmapped reads of (B-2)
R1	         298569 (1.3103%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       22488115 (98.6897%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	         133212 (0.5846%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      5923.662	[I-3] RPMH of (I-1)
R1	      5846.046	[I-4] PPM of (I-1)
R1	    446168.222	[I-5] RPMU of (I-1)
R1	           1301 (0.0057%)	[I-6] Total chimeric reads of (I-1)
R1	        57.853	[I-7] RPMH of (I-6)
R1	        57.095	[I-8] PPM of (I-6)
R1	      4357.452	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       27120049 (100.0000%)	[A] Total raw reads
R2	       22786684 (84.0215%)	[B] Total reads after QC of (A)
R2		
R2	       22786684 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       41874956 (91.8847%)	[B-3] Total mapped reads of (B-2)x2
R2	        3698412 (8.1153%)	[B-4] Total unmapped reads of (B-2)x2
R2	       20905901 (91.7461%)	[F] Total mapped reads of (B-2)
R2	        1880783 (8.2539%)	[G] Total unmapped reads of (B-2)
R2	         298325 (1.3092%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       22488359 (98.6908%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	         132642 (0.5821%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      5898.252	[I-3] RPMH of (I-1)
R2	      5821.031	[I-4] PPM of (I-1)
R2	    444622.476	[I-5] RPMU of (I-1)
R2	            994 (0.0044%)	[I-6] Total chimeric reads of (I-1)
R2	        44.201	[I-7] RPMH of (I-6)
R2	        43.622	[I-8] PPM of (I-6)
R2	      3331.937	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
5916.0139	5838.4976	445592.1412	133040	0	133040	133040.000	9161337	ALL_R1	viral	Lymphocryptovirus	0.0
<<
5888.4407	5811.3488	443882.9062	132422	1	132421	132421.368	8680409	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.1989	0.1963	14.9781	7	4	3	4.472	532	R1U	bacteria	Alcanivorax	n/a	
<<
57.4526	56.6998	4327.3079	1292	0	1292	1292.000	87882	R1U	viral	Lymphocryptovirus	n/a	
<<
0.1708	0.1686	12.8752	7	5	2	3.841	504	R2U	bacteria	Tetrasphaera	n/a	
0.1427	0.1408	10.7567	7	6	1	3.209	480	R2U	bacteria	Alcanivorax	n/a	
0.0445	0.0439	3.3520	1	0	1	1.000	36	R2U	bacteria	Yersinia	n/a	
<<
43.7560	43.1831	3298.4162	984	0	984	984.000	64461	R2U	viral	Lymphocryptovirus	n/a